Setaria italica (foxtail millet): 101758423
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Entry
101758423 CDS
T02818
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog A
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03013
Nucleocytoplasmic transport
sita03015
mRNA surveillance pathway
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101758423
09122 Translation
03013 Nucleocytoplasmic transport
101758423
03015 mRNA surveillance pathway
101758423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101758423
03041 Spliceosome [BR:
sita03041
]
101758423
03009 Ribosome biogenesis [BR:
sita03009
]
101758423
03012 Translation factors [BR:
sita03012
]
101758423
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101758423
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101758423
mRNA cycle factors
Stress granule specific factors
101758423
Spliceosome [BR:
sita03041
]
Complex C
Other components
EJC/TREX
101758423
Ribosome biogenesis [BR:
sita03009
]
Eukaryotic type
90S particles
Helicases
101758423
Translation factors [BR:
sita03012
]
Eukaryotic type
Initiation factors
eIF-4
101758423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
AAA_30
Motif
Other DBs
NCBI-GeneID:
101758423
NCBI-ProteinID:
XP_004954515
UniProt:
K3YSY1
LinkDB
All DBs
Position
I:complement(41947835..41951042)
Genome browser
AA seq
407 aa
AA seq
DB search
MAAPTTSRRGPGAARNMDDDNLTFETSPGVEVVSSFDQMGIKDDLLRGIYGYGFEKPSAI
QQRAVLPIINGRDVIAQAQSGTGKTSMISLTVCQIVDTAVREVQALILSPTRELASQTER
VMLAIGDYLNIQVHACIGGKSIGEDIRRLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLL
VLDEADEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITSKFMTEPVRILVKRD
ELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTV
SAMHGDMPQQERDAIMSEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHR
IGRSGRFGRKGVAINFVRKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcccaccacctcccgccgcggccccggcgccgcccgcaacatggacgacgac
aacctcaccttcgagacctccccgggggtcgaggtcgtcagcagcttcgaccagatgggg
atcaaggacgacctcctccgcggcatctacggctacggattcgagaagccctccgccatc
cagcagcgcgcagtcctccccatcatcaacggccgcgacgtcatcgcgcaggcccagtcc
ggcacgggaaagacatccatgatctcactcaccgtctgccagatcgtcgacaccgccgtc
cgcgaggtccaggctttgatcctctcacctactagagagcttgcttcgcaaacagagaga
gttatgctggctatcggtgactacctcaacatccaagtgcatgcttgcattggtggaaaa
agtatcggcgaggatatcaggaggcttgagaacggagtgcacgttgtctcaggaactcca
ggcagagtatgtgatatgatcaagagaaggaccctgcgaacaagagccatcaagcttcta
gttctggatgaagctgatgagatgttgagcagaggctttaaggatcagatttacgatgtc
tacagatacctcccaccggaacttcaggtggttttgatctctgccactcttcctcatgag
atcctagagattactagcaagttcatgaccgaaccagttaggatccttgtgaagcgtgat
gagttgaccctggagggcatcaaacaattctttgttgctgttgagaaagaagaatggaag
tttgatacgctgtgtgatctttatgatacgttgaccatcacccaagctgttattttctgc
aatactaagagaaaggtggattggcttactgaaagaatgcgcagcaataacttcacagta
tcagctatgcatggtgacatgccccaacaggaaagggatgccatcatgtcagagttcagg
tctggtgcaactcgtgtgttaatcactacggatgtttgggctcgaggactggacgttcag
caggtttcgcttgtcataaattacgatctcccaaataatcgtgagctttacatccatcgc
attggtcgctctggtcgtttcgggcgcaagggtgtggcgatcaatttcgtgcgcaaggat
gacatccgtatcctgagggatatagagcagtactacagcacacaaattgatgagatgcca
atgaatgttgctgatcttatttga
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