Setaria italica (foxtail millet): 101758628
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Entry
101758628 CDS
T02818
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101758628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101758628
04121 Ubiquitin system [BR:
sita04121
]
101758628
03036 Chromosome and associated proteins [BR:
sita03036
]
101758628
03400 DNA repair and recombination proteins [BR:
sita03400
]
101758628
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
101758628
Ubiquitin system [BR:
sita04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
101758628
Chromosome and associated proteins [BR:
sita03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
101758628
DNA repair and recombination proteins [BR:
sita03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
101758628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-HC5HC2H_2
PTCB-BRCT
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
101758628
NCBI-ProteinID:
XP_012700132
UniProt:
A0A368QGV6
LinkDB
All DBs
Position
III:15177262..15181350
Genome browser
AA seq
659 aa
AA seq
DB search
MQRYVLEQGQMQSQVFKRGQMQSNVLKRRQMQSDELTRQFNSITKPSLAGATKASLLKRN
KTGPNQLSYRESNVSTKHVLSEDIGGTTELKRLQTPINLFEDECIFCHSFRTDEEIHGPM
VCYLKGRLVFIEEGNLSKVIYVHKKCLMWAPEVCWDFESNIVENLESEIRRASRLRCARC
GLQGAALGCYYKHCRKSFHIPCAVQIIDCRWDVDKRNVLCPKHVSKTLPCDKLSTHTKEN
DHSSSLRQSQCSQEDYPFTDFEEEGQQSDQLKTTCSFLPVGQCTDKEGKIDDHHREKQQT
DQLNTSNVPQSTYIDKEADNHQRKNQQTDHFNILNPSCLPQKQSSQKEGTSTNSSRDGQQ
IDQLDSSGSSSLQLGQHSDEEGISKNHERDDQQTHKRNTSNFPSLPKSCHPDEEGISNVY
KREEIKAYRADTSSCPSDQMVLLGLSLSASEKDSLQEFVRWSNGKLTKEWDKNVTHVIVG
KGPGSSWNRSFEVLMAVLLGKWVIHFEWIMDCSSEMRPRPEASYEVTSSMDSLKTMDGPK
KGRIRAATGAPNLFSGLHFCLSAYMNPDGRHRVRDLIAAAGGKVLEGGFLDPPLECFDGS
SSVKPYFVFDGDVPGEFALGTLLKEVEEARKHAAAGARVISHQRVLDAVAAYDAEILNR
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgcagagatatgtccttgagcaaggtcaaatgcagagccaagtctttaagcgaggtcaa
atgcagagcaatgtccttaagcgacgtcaaatgcagagcgacgaattgaccagacaattt
aactctataactaaacccagccttgctggggcaacaaaggcatcgctgttgaagcgaaat
aagacagggccaaatcagctttcgtatagagaaagcaatgtatctacaaaacatgtcttg
tccgaagacattggaggtactactgaattgaagagactgcaaactccaatcaacttattt
gaagatgaatgcattttctgccattcgtttagaacggatgaggagattcatggtccgatg
gtatgttatctaaagggaagacttgtgttcattgaagagggcaacttatcaaaggtcatc
tacgtccataagaaatgcctgatgtgggctcctgaagtatgctgggactttgagtctaac
attgttgagaacttggagtcagaaattaggcgtgcttcaagactgagatgtgcaagatgt
ggactccagggagcagcccttggttgttattataaacattgcagaaagagttttcacatt
ccatgtgcagttcagataattgattgccgctgggatgttgataaacgtaatgtgctgtgc
cctaaacatgtttcaaagacactaccatgtgataagctgagtacacatacaaaggagaat
gaccattcttcttccttgcgtcaaagccaatgttcacaagaagattatcctttcactgat
ttcgaagaggaaggccaacaatctgatcagcttaaaaccacatgttcattcttgcctgtg
ggccaatgtacagacaaggaagggaaaattgatgatcatcatagggaaaaacaacaaaca
gatcagcttaacacttcaaatgtgcctcagagcacatatatagacaaggaagctgacaat
catcaaaggaaaaatcaacaaacagatcattttaacattttgaatccttcctgcttgcct
cagaaacaaagttctcaaaaagaaggaacttccaccaatagctcaagggatggccaacaa
atagatcagcttgacagctcaggttcctcttccttgcaattgggtcagcattcagacgag
gaaggaatttctaagaatcatgaaagggatgatcaacaaacgcataagcgtaacacctca
aattttccctccttgcctaagagctgtcatccagatgaagaaggaatttccaatgtttac
aaaagggaagaaataaaagcatatcgggctgacacatcaagctgcccttctgatcagatg
gttttgcttggtttgtctttaagcgcgtcagagaaggattccttgcaggagtttgtacgt
tggtccaacgggaagctgacgaaagagtgggacaaaaatgtgactcatgtcattgtgggc
aaaggtcctggtagctcatggaacagatcatttgaagtcctcatggcagtactgctgggg
aaatgggttatccattttgaatggatcatggactgctcctcagagatgcgtccacgtcca
gaagcttcttatgaggtaacatccagcatggattcactcaaaacaatggacggaccgaag
aagggaagaatccgagcagccacaggggcaccgaatctgttctcgggactgcacttctgc
ctcagcgcctacatgaaccctgacggcaggcaccgcgtgcgagacctcatcgcagccgcc
ggagggaaggtcctggagggaggatttctggacccgccactcgaatgctttgacggctct
tcttcggtgaagccgtacttcgtcttcgacggcgacgttcccggagaatttgccctgggc
acgctgctgaaggaggtggaggaggcgaggaagcacgcggctgcgggcgcgcgggtgatc
agccaccagagggtgctggatgccgtcgcggcatacgacgccgagatcctcaaccgctga
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