Setaria italica (foxtail millet): 101758941
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Entry
101758941 CDS
T02818
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101758941
09123 Folding, sorting and degradation
03018 RNA degradation
101758941
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101758941
03041 Spliceosome [BR:
sita03041
]
101758941
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101758941
mRNA degradation factors
5'-3' decay
Lsm complex
101758941
Spliceosome [BR:
sita03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
101758941
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
101758941
NCBI-ProteinID:
XP_004967816
UniProt:
K3XMX9
LinkDB
All DBs
Position
V:5106253..5110231
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AA seq
146 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRSDRKPPGVGRGRGRGDVGAKPGGRGIGRGQDDG
GRGSGGRGRGGIGGKGGNKGGGRGRG
NT seq
441 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctctcgcttctcaagactgcccaggggcatcccatgctcgtggagctgaag
aatggagagacgtacaacgggcatctggtcaactgcgacacgtggatgaacatccacctt
agggaggttatttgcacctcaaaggatggtgacaagttttggaggatgccggagtgttac
atccgcggtaacaccattaagtatcttcgagtgcctgatgaggtgattgacaaggttcag
gaggaaacttccaagagtcgatcagataggaagccacctggtgttggccgtggaagagga
aggggggatgtcggtgctaagcctggaggcagaggcattggacgtggccaagatgatgga
ggcagaggcagtggtggccgtggaaggggtggaattggtggcaaaggtggtaacaaagga
gggggccgtggccgtggctga
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