Setaria italica (foxtail millet): 101759085
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Entry
101759085 CDS
T02818
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101759085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101759085
03012 Translation factors [BR:
sita03012
]
101759085
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101759085
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101759085
Translation factors [BR:
sita03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101759085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
R3H
HA2_C
HA2_N
nSTAND3
Ank_5
Ank_2
ATPase
AAA_19
AAA_22
Rad17
AAA_23
Ank
PhoH
ResIII
AAA_7
AAA_16
AAA_11
ABC_tran
Motif
Other DBs
NCBI-GeneID:
101759085
NCBI-ProteinID:
XP_004970095
UniProt:
K3XDX8
LinkDB
All DBs
Position
V:37866337..37876207
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AA seq
1197 aa
AA seq
DB search
MGRKGRKGKDAAAAGGGGVREATLVRVSKVLEDFRASDAEVYTFEPDISRLERGAIHQMC
RKMGMTSKSSGFGEQRRLSVYKSKRKQGPAMEEGPSHLRFSEEAIHVLQDLFTHYPPDDA
DLHGDANRNSSGKAANTKWKTDSAFCRPAMSKPDITKKVEMLASKINGSTQLRKIMEDRS
KLPISSFKDAITSTLENHQVVLISGETGCGKTTQVPQYILDHMWGKGESCKIICTQPRRI
SAISVAERISAERGEAVGDTVGYKIRLESKGGKNSSVMFCTNGVLLRVLIGRGTNTSKTR
NPKRSLDDAILGISHIIVDEIHERDRFSDFMLTILRDLLPVYPHLRLVLMSATIDAERFS
QYFNGCSVIQVPGFTYPVKTYYLEDVLSILQSVGDNHLNTTTSDKKQSSVLTDDFKSSMD
DSINLALLNDEFDPLLELISAEQNPEIYNYQHSETGVTPLMVFAAKGQLGDVCMLLSFGV
DCSAQDHDGKSALDWAQQEKQQEVYEVIKKHMECSTAKSTEDNELLNKYLATINPEHIDT
VLIERLLGKICVDSNEGAILVFLPGWEDINQTRERLLASPFLRDSSRFLVLSLHSMIPSL
EQKKVFKRPPAGVRKIILSTNIAETAVTIDDVVFVIDSGRMKEKSYDPYNNVSTLHASWV
SKANARQREGRAGRCQAGICYHLYSRFRASSLPDYQIPEIKRMPIEELCLQVKLLDPNCR
IADFLKKTLDPPVPETVRNAITVLQDLGALTQDEQLTELGEKLGSLPVHPSTTKMLLFAI
LMNCLDPALTLACAADYRDPFLLPMAPDERKRAAAAKVELASLYGGFSDQLAVVAAFDCW
RRAKDRGQESQFCTKYFVSSNIMYMLSNMRKQLQNELSQRGFVPADTSACSLNSKDPGIM
RAVLMAGAYPMVGRLLPPRKNARKAVVETASGAKVRLHPHSCNFNLSFSKSSGNPLLIYD
EITRGDGGMYIKNCSVVGSHPLLLLATEMVVAPPDDDSDEEEDSSEDEAEKSTLVQHKEE
IMSSPDNTVSVVVDRWLRFDATALDVAQIYCLRERLASAILFKVKYPQDVLPQALGASMY
AIACILSYDGLPAMVPSNDLPANRGSGQNSAEASSFSQGRRAGYIPPGGFLVSLLADKPH
QPPNFQNSYNHPGGASVHTGPSRAPTGRFDQSQRSFRNSGPGSSTRRSFKRQRDAAR
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atggggcggaaggggcggaaggggaaggacgcggctgccgcgggcggcggcggcgtgagg
gaggcgacgctggtgcgcgtctccaaggtgctcgaggacttccgcgcctccgacgccgag
gtgtacacatttgaacctgatatatccagactagagcgaggtgcaatccatcagatgtgt
agaaaaatgggcatgacatccaaaagttctgggtttggtgaacagcgacgcctctctgtt
tataaaagtaaacggaagcaggggcctgctatggaagaaggacctagccaccttaggttt
tctgaagaggcgatacatgttttgcaggatttatttacgcattatcctcctgatgatgct
gatttacatggggatgccaaccggaattctagtggtaaggcagcaaacaccaaatggaaa
acagacagtgccttttgcaggccagcaatgagcaaacctgatataacgaagaaagttgag
atgcttgcctctaaaataaatggatccacacagttgaggaagatcatggaagacagatca
aagcttcctatttcatccttcaaggatgccatcacttcaactttggaaaatcaccaggtg
gttcttatttctggagaaacaggctgcggtaaaaccacccaggttccacaatacatcttg
gatcatatgtggggcaaaggagaatcatgtaagatcatatgcactcaaccacgtcggatt
tcagctatctcagttgccgagcgaatctctgctgaaagaggagaagctgttggtgataca
gttggatataagatacgtttggagtcaaaaggagggaagaattcatcagtcatgttctgc
acaaatggcgttcttttgagagtactgataggaagaggaactaacacctcaaagacacga
aatccgaagcggtcattagatgatgcaattttgggaatatcacacatcatcgtggatgaa
atccatgaaagggataggttttctgatttcatgctgactattctaagagatttgttgcca
gtgtatcctcatcttcgtttggtactcatgagtgcaacaatcgatgctgagcggttttca
caatacttcaacggatgttcagtcattcaagtccctgggtttacctatcctgtcaaaact
tactatttggaggatgtgctttctattctgcaatctgtgggtgataatcatcttaatact
acaaccagtgacaaaaagcagagcagcgttttaactgacgatttcaaaagctcaatggat
gattcaattaacctggctttactcaatgatgaatttgatcctctccttgagcttatttct
gcagagcagaacccagaaatctacaactatcagcattcagagactggtgtaacaccttta
atggtttttgctgctaagggtcagcttggggatgtttgtatgcttttatcttttggtgtt
gattgttcagcacaggatcatgatggaaaatctgcattagattgggcacagcaagaaaaa
cagcaagaggtttatgaagtaatcaagaaacatatggagtgcagtacagcaaaatcaact
gaagataatgagctgcttaataagtacttggcaactattaacccagagcacattgatact
gtgctaatagaacggttgcttggaaaaatttgtgtggattccaatgaaggagctatcttg
gtatttcttcctgggtgggaagatatcaatcaaactcgggaaaggttacttgcttctcca
ttcttacgggattcatcaagatttcttgtattgtcacttcattccatgattccgtcttta
gaacagaaaaaggtcttcaaacgtccacctgcaggggttcgtaaaattattctctcaacc
aacattgcagagactgctgtgacaattgatgatgttgtgtttgtcatagatagtgggaga
atgaaagagaaaagctatgatccatacaataatgtgtccacacttcatgcttcctgggtt
tcaaaagccaatgcaagacaacgtgaagggcgtgctggtcgttgtcaggcaggaatttgc
tatcatctttactcaaggtttagagcatcatcattaccagactaccaaattcctgaaata
aaaagaatgcccatcgaggaactttgtttgcaggtcaaactgcttgatccaaactgcaga
atagcagactttctgaagaaaacattggaccctccagttccagaaactgtaagaaatgcc
attactgtacttcaggatcttggtgctttaacacaagatgaacaactaaccgagttagga
gaaaagctgggttccctgccggtccatccatccacaaccaagatgctcctgtttgctata
ttaatgaactgcctggatccagcattgacattggcatgtgcagcggattatagagatcca
ttcctccttccaatggccccagatgagaggaaaagagcagctgcagcgaaagttgagctt
gcttcgttgtatggtgggttcagtgaccagcttgctgttgtggcggcattcgactgctgg
aggcgtgccaaagatagaggccaagaatctcaattttgtacaaagtactttgtctcttca
aacatcatgtatatgctatcaaacatgaggaaacagcttcagaatgaactgtctcaaaga
gggttcgttcctgcagatacatctgcctgcagcctaaactcaaaagatccaggtatcatg
cgtgctgttcttatggccggtgcctacccaatggtagggaggttgctccctcctcgcaaa
aatgctagaaaagcagttgtggaaacagcaagtggtgccaaagttcgtctacatccacat
tcgtgcaattttaacctatcatttagtaaatcttctgggaatccactgctgatatacgat
gagatcactcgaggtgatggtggaatgtatataaaaaattgctcagttgttgggtcacat
cctttgcttctgctcgctacagaaatggttgttgctccacctgatgatgatagtgatgaa
gaggaagattccagcgaggatgaagctgagaaaagcactttggtacagcacaaagaagag
attatgtcttctcctgataacactgtttcagtagttgttgatcggtggctccgatttgat
gctacggctctggatgttgctcaaatttactgcttaagagaacgtctagcatcagctatt
cttttcaaagtcaaatatcctcaagatgttctcccacaagcccttggagcgtcgatgtat
gccatcgcatgcatcctctcatacgatggcttgcctgctatggttccatccaatgatctt
ccagcaaaccgaggttcaggccagaattcagcggaagctagcagcttctcccagggaaga
agagctggttatattccacctggtggtttcctcgtgtccttgttggctgataagccacat
cagccaccaaattttcagaactcatataaccatccaggtggtgcttcagtacatactggg
ccatctagggctcccactggtaggtttgaccaatcccagcgttctttccgcaattctgga
cctgggagttcaacgcgacggtctttcaaaaggcagcgcgacgcagcacggtga
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