Setaria italica (foxtail millet): 101759396
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Entry
101759396 CDS
T02818
Name
(RefSeq) pre-mRNA-processing protein 40A
KO
K12821
pre-mRNA-processing factor 40
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101759396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sita03041
]
101759396
Spliceosome [BR:
sita03041
]
Complex A
U1 snRNP components
U1 related factors
101759396
Complex B
101759396
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
Motif
Other DBs
NCBI-GeneID:
101759396
NCBI-ProteinID:
XP_004956604
UniProt:
K3ZQD8
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All DBs
Position
II:complement(26991018..27004755)
Genome browser
AA seq
983 aa
AA seq
DB search
MASNMQPSGPPQPPRPPMMGSNAQPQNLGPPMPMQFRPVVPSQQPPQFMPPPAQQFRPVG
QPMPGANIGMPGQMPHFPQPGQHLSHSSQVPPASQGVPMAYQPARPMSSAPMQPQQQAVY
PGGHMPTMGAPMQPPSYTYQPTSIPPVVQPWGQSVPHVTPLVQPGHQPVPATATLPSVNS
SEPSSSDWQEHTAAEGKKYYYNKKTRQSSWEKPVELMTPLERADASTEWKEFTTPEGRKY
YFNKVTKQSKWTIPDELKAARELAEKASNQQSDRETGTAAALVGSAASEPSTVPANQSST
AVGLIAPSTHDASANPVPPGPVPSHNVDNTSSSSTIGMQNGGTSTAVVPVPTSTEVKLVA
TDAGTSRNNNESSSVTTGADIEDGTSAEDLEEAKKTMPVAGKINVTPLEEKTSEEEPVVY
ATKTEAKNAFKSLLESVNVESDWTWEQTMRVIINDKRYGALKTLGERKQAFNEYLNQRKK
FEAEEKRIKQRKARDDFLAMLEECKELTSSTRWSKAILMFDDDERFKAVERPREREDLFE
GYLVELHKKEKAKAIEEHRRHVAEYKAFLESCDFIKATTQWRKVQERLEDDERCSRLEKI
DRLNVFQDYIRYLEKEEEEQKRIQKEHVRRQERKNRDGFRKMLEEHVNDGTLTAKTRWRD
YCSQIKESQAYLAVASNTSGSTPKELFDDVIEELDKQYLDDKTCIKEVVKSGKIPMTTSW
TLEEFQTAILEDDALKGISTINIKLIYDDQIERLREKEQKDAKKRQRLGENFSDLLYSIT
EISAASTWDDSKQLFEDSQEFRALDSETYARELFEECVVHLKERLKEKERLREEEKAKRE
KDREEKEKKKEKERKEKERKEKDREKEREKEKGKDRSRRDETDIDGADVENHGSKDKKRD
KQKKHKRRHHDTDDASSERDDKDDAKKSRRHTSDRKKSRKHTHASDSDSENRHKRHRKDR
DSSRRNGAHELEDGELGEDGEVH
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atggccagtaatatgcagccttctgggccacctcagcctcccaggcctcccatgatgggt
tctaacgctcagccacaaaatcttgggccaccaatgcctatgcagtttaggccagtggtt
ccttcgcaacagcctcctcagttcatgccaccaccagcgcagcagtttcggcctgttggt
cagcctatgccgggagctaacattggcatgccagggcaaatgccacattttccacaacct
ggacagcatttgtctcattcaagtcaggttccacctgcatcacaaggggttcctatggca
tatcagccagctagaccaatgtcatcagcacctatgcagccgcagcaacaagctgtgtat
cctgggggccatatgcctaccatgggcgcccctatgcagcccccatcctatacttatcaa
ccaacttcgattcctcctgtagtgcaaccctggggacagagtgtgcctcatgtgactcct
ctagtgcagcctggacaccagccggtgccagcaacagctactttgccttcagtcaactcg
tctgaacctagctcttcagattggcaagaacacactgcggctgaggggaagaagtactac
tataataagaagactaggcaatcaagttgggagaaacctgtcgaattgatgacacctttg
gagagggctgacgcctcaaccgaatggaaagaatttactactccagaaggacgaaagtac
tatttcaacaaagtaacaaagcaatcaaaatggactattcctgatgagttaaaggctgca
cgtgaattggcagagaaggcatcaaatcaacaatcggatcgagaaacaggaacagctgca
gctcttgttggatctgctgcctctgaaccttctactgtacctgctaatcagtcttcaact
gcagttggtttaattgctcccagcacgcatgatgcatcagcaaaccctgttcctcctggt
cctgtcccatcacataatgtggacaacacttccagttcttctactattggcatgcaaaat
ggtggtacaagtactgctgttgttcctgttccaacaagcacagaagttaaattagttgca
accgatgcagggaccagcagaaacaataatgaaagttcatctgtaacaactggtgcggac
atagaagatggtacatctgctgaagatttggaggaggccaaaaagaccatgccagttgca
gggaagattaatgtcactccactggaggagaaaacaagtgaagaagaacctgtagtctat
gccactaagacggaggcaaaaaatgcattcaagtccctgctcgagtcagtaaatgttgag
tctgattggacatgggagcagactatgagagtcatcataaatgacaaaagatatggagct
ttgaaaactcttggagagagaaagcaagctttcaatgagtacttgaaccagcgaaaaaag
tttgaagctgaagaaaaacgtatcaaacagaggaaagcacgtgatgatttccttgcaatg
ctggaagagtgcaaggagcttacgtcatcaacaagatggagcaaagcaattcttatgttt
gacgatgatgaaaggttcaaagctgttgaacgtccaagggagcgtgaagatttatttgag
ggctatcttgtggaactacataagaaggaaaaagccaaggctatcgaagaacacagaagg
catgtagcagaatacaaagcttttctagaatcatgcgacttcatcaaggcaactactcag
tggagaaaagttcaagaacggctggaagatgatgaacgctgttctcgacttgaaaagatc
gatcgcttgaatgtttttcaagactacatacggtatctggagaaagaggaggaagagcag
aagcgaatacaaaaggaacacgtaagaaggcaagagagaaaaaaccgtgatggatttcgt
aaaatgctggaagaacatgtcaatgatggcacacttactgcaaaaactcggtggcgtgat
tactgctcacagataaaggagtcacaggcttacctggcagtggcgtcaaacacgtctggc
tccacgccaaaagagctatttgatgatgtgatcgaggaacttgataaacagtatctagat
gacaagacctgcatcaaagaagtggtgaagtctggaaagattccaatgacaacctcatgg
acattggaggaatttcaaactgcaattctggaggatgatgctcttaaaggaatatcaacc
atcaacatcaagcttatttatgatgatcagattgaaaggctcagggaaaaagagcaaaag
gatgctaagaagcgccagcgattgggtgaaaatttttcagatcttctgtactcaatcacg
gaaatatcagctgcttcaacgtgggatgattctaaacagctatttgaggacagccaagag
ttcagggccttggacagtgagacttacgctagagagctttttgaagagtgtgttgtccac
ctgaaggaaaggttaaaagagaaagaacgtttgagggaggaagaaaaggcaaaaagagag
aaagaccgtgaagagaaagagaagaagaaagagaaagaaaggaaggagaaagagcgcaaa
gaaaaagaccgggagaaggagagagagaaggaaaaagggaaggatcgatcaaggagagat
gaaactgatattgatggtgctgatgtggagaaccatggttcaaaagataagaaaagagat
aaacaaaagaaacataagagacgccaccatgacacagatgatgctagttctgaaagggat
gataaagatgatgctaagaaatctcggaggcataccagtgatcgcaagaaatctaggaag
catacacatgcttcagactcggatagtgaaaaccggcacaaacgacatagaaaggaccga
gatagttcccgaagaaatggtgcacatgagctggaagatggtgaacttggagaagacggc
gaggtccattag
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