Setaria italica (foxtail millet): 101761773
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Entry
101761773 CDS
T02818
Name
(RefSeq) protein RST1 isoform X2
KO
K27498
focadhesin
Organism
sita
Setaria italica (foxtail millet)
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101761773
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101761773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3730
Motif
Other DBs
NCBI-GeneID:
101761773
NCBI-ProteinID:
XP_004968336
UniProt:
A0A368R3S4
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Position
V:complement(10009342..10023164)
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AA seq
1828 aa
AA seq
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MASSAASSAAALSRLVDRTRVPDPTLQRHAVAAVFRHLLSLPAPLPEAAHDAASALLASP
HPAVAAHAAASVARLAASRPDLLPPGLALPLLLAPLAASPSPRLTSCLVKAVSALAACAL
RSGSRFPPHDHPFVQALASGADGARAELARQAARMVAEGLDGTVGFLRPFVMFSVVRKGD
AAFARDLIGALTAAAAAAGKAGVAISVLKLLEEGMLHFGRGDDQEMQLWLCSAECLVDAY
VVLLRKLANAHMPTYDVQASSATLMEALLTQCSFHKKFLGITSSLLGLSKHLFSVQKDLG
LCYLPEISVVLSSLSYSLSGLEFEHEQLAGLKLLAFLIEWKYENVLERKEQTHGLSEELL
CVMAVINLGISPSKSVKAVVYHVLSRFSSLILDLPASHSSEQQDISTDYHISKPALILPK
LLHHIWSQPSSAGFIFMKHTAIKVSPDSGPKCLEARYWTHQLNDYLAVLRREKLTLDGLS
SKKTSSVAISSLISSVACVLVMHPKLGTSAAESLAVLGASDPRLGMPLFVVILFYSKILC
SNKNFSTEILLSLIESLPSLAIHGFLLPLALQWISPMLKRDTNPVLYAIAVRLLCKIWVV
TDWAFPNLQAILDPENISNFVSDREISMSIASSIRDVCKHNPDRGVDLILSVSFCIESHD
SVVQALGLESLSYLCEADVVDFYTAWKVISKELLDYSVEPAVAHSLCVLLRCGAMDAEVY
SGISKNLIGILWSIGTSKKNNSESLWVKARGAAFHSLSHYKVSLVQDAIPDFWKRNYEFF
TNEDNLTVLNSMENLQDEIVKFEHINRRRVTTDKRVVVHKFEKLLDVFPQAVFKGKSTHH
QLPGAALLTLNFTPKDILNEGKSKSLPRVHTAFEQAFTEIAESMYISRNIEVALLALHSW
KSFVSNWMQAVVALLDSKEPSKLNKALKAANDIFKILCDHVPVSTPRVAVNIALVIGALC
LIVPPTAHLVISSASDFLLKWLFQYEHEHQQWSAALSLGLIFNCFHPTDKKSRFQVINGL
LEVISKTESGLAKGACGLALGYACQGLLTRAHNATDAEVAAATELNERASVEDILHALVS
SLIQLCPSSCYSLKKLGIYGIESIEGMEENNDSFNDDPWAIAGLVLGLGNSVVALYRLGA
YDTVIEVKDILISWIPNVSSSCALFDEMNSVSLCIGSCLALPSVVAFCQRVELMNEDLDA
LFNRYTSLASELLNLNKSGILFQNLLMAICIGAGSLLSFILDDGLHAMDFSAVKKLLDTL
RHIYTHPFPPLVHLGGMFGVVNACGAGAGDLTGMCSKLMTSQIKHEESSLVRGPLLVSPI
GETLSTSMVHEIYLLAKDAEDKNIQDNAAWAISFLRSRWLSKNLILYNDNGSNRSSGDPS
QASSFSEQSLVWNLSRWLNDLKLEKPFDMVPVSTVGTVLRCLSKAPRLPTTDWGVIVRRC
MKVEVQIPYKPTDQQDLKFLREECLHFSLAHATHISPLLQFLDYLTDILRFRRLEINVQS
ILLQHLSHLMKLFSDSRLDKLYEDLTEYLYSPTSSYLNYSCEQKSMIRMSFWEGICKCLV
DVVSEESGGFSFTKKCIECLLPLLTLHNDGQPEFMDEWSAALTCLTNAQSSWLGDMLQVR
NAALVTEEEHVDVAKKIIIRARLCATGCGSVHELGNIKTMILCARADGVWWSVLVEIAAA
INSVENSIKRQWLLDALEIGCVTAHPSTVLRFVGLLCDSCCIYMPLLVVNSRNVLSDLPV
TLPSFLSSSIWDDFRDIVADKLWLLTSHIYTWAEQLAHGNDLTGHDHIHRSETEMATFLA
NILRSTCIAVEDYLTVDRKLKLANLESL
NT seq
5487 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctccgccgcctccagcgcggcggcgctctcccgcctcgtcgaccgcacccgg
gtcccggaccccacgctgcaacgccacgcggttgcggccgtcttccgccacctcctctcc
ctccctgcgcccctccccgaggccgcccacgacgccgcctccgcgctgctcgcctcgccc
caccccgccgtcgccgcgcacgccgcggcctccgtcgcccgcctcgccgcctcccgcccc
gacctcctgcccccaggcctcgccctcccgctcctcctcgcgcccctcgcggcctccccc
tcgccccggctcacctcctgcctcgtcaaggccgtctccgcgctcgcggcctgcgccctc
cgctccggctcccgcttcccgccccacgaccacccattcgtccaggcgctagcgtcgggg
gcggacggcgcgcgcgcggagctggcgcggcaggcggccaggatggttgccgaggggctg
gatgggactgtagggttcctgaggccgttcgtgatgttctctgtggtgaggaagggggac
gccgcattcgcgagggatttgatcggcgcattgacagcagcggccgcggcagcggggaag
gctggtgtcgcgatctcagtgctgaagttgctcgaagagggcatgctgcatttcgggcgc
ggggatgatcaggaaatgcagctctggctttgttctgcggagtgcttggttgatgcttat
gtggtgttgttgaggaagttggctaatgctcacatgccaacatatgatgttcaagcaagt
agtgcaacattgatggaagcactcctaacacaatgttcatttcataaaaaatttctggga
atcacttcttcacttcttgggctatcgaaacatttattctcggtgcaaaaggaccttgga
ttatgctatctacctgagatttctgttgttcttagttctctttcttactctctcagtggg
ctggagtttgaacacgaacagctagctggcttgaaacttctggcctttttgattgaatgg
aaatatgaaaacgtgcttgaacggaaagaacaaacacacggcctcagtgaggagcttctc
tgtgttatggcagtaatcaaccttggaatttctccatctaaatctgtgaaagcagtggta
tatcatgttctgtcaaggttcagctcgctcattttagacttgcctgcctctcattcatca
gagcaacaagatatttcaacggattaccacataagcaaacctgcacttattcttcctaaa
cttctgcatcatatatggtctcagccatcttcagcaggcttcatttttatgaagcacaca
gctatcaaggtttcacctgattctggtccgaaatgtctggaagcaagatattggactcat
caactaaatgactatctggcagtccttcgcagagaaaagcttacattggatggtttgtct
tcaaaaaagacatcttcagtagcaatatcatctctgataagctctgtagcatgcgttttg
gtaatgcatccaaaacttggtacttctgctgcagagtctttggccgtgcttggtgcatca
gacccaagattgggtatgccattgtttgtagttatcctcttctatagcaagattctatgc
agtaacaaaaatttttcaacagagatcttgctcagtttgatagagtcattgccatcactt
gctatacatggttttttgcttccactcgctctgcaatggatatcaccaatgcttaaaagg
gacacaaatccggttctatatgctatagctgtacgattactctgcaaaatatgggttgtc
actgattgggcatttccaaacttacaagcaattctggatcctgaaaatatttccaatttc
gtctctgacagagagatttccatgagtattgcctcatcaatacgtgatgtttgcaagcac
aacccagatagaggtgttgatttaatattatctgtatcattttgcatcgagagtcatgat
tctgtggttcaagctcttggtcttgagagtctctcatatctctgtgaagctgatgtagtc
gatttctatacggcctggaaagttatatcaaaggagctgcttgattattccgttgagcct
gctgttgctcacagtttgtgtgtcctgttgagatgcggagcgatggatgctgaggtgtat
tctggaatatctaaaaacctgataggaatattgtggagcattggaacatccaagaaaaat
aattccgaatctctctgggttaaagcaagaggagctgcttttcactccttgtctcactat
aaggtctcacttgttcaagatgctattcctgatttctggaaacgaaactatgaattcttt
actaatgaagataatctgacagttctcaactccatggagaaccttcaagatgagattgtc
aaatttgaacacataaaccgtcgtagagtgaccactgataaaagagttgtagtgcataaa
tttgagaagctactggatgttttccctcaggctgtgtttaaaggaaagtcaactcatcat
cagttgcctggtgctgctcttctaactcttaattttaccccaaaggatatacttaatgaa
gggaaatctaagagtttgcctagagttcatactgcttttgagcaagcatttacagaaatt
gctgaatctatgtacatatcaagaaacatagaggtagctcttcttgcattgcattcatgg
aagtcatttgtttccaattggatgcaagcagttgttgctttgcttgacagtaaagagcca
tcgaagttaaacaaagctttaaaagctgctaatgatatatttaagattttgtgcgatcac
gttccagtatctactcctcgagttgctgttaacattgcccttgtcattggagcactatgc
ttgattgttccaccaactgcccatttggtaatatcttctgcatcagattttcttttaaaa
tggctgtttcaatacgagcatgagcaccagcagtggtcagcagcactctctcttggacta
atattcaattgttttcatcccacggataaaaagagcaggtttcaggttattaatgggctt
cttgaggttatctcaaaaactgaaagcggtcttgcaaaaggagcttgtggactggcatta
ggctatgcttgccaaggtcttttgacgagagcacataatgctactgatgcagaagtagcg
gctgctacagaactcaatgagcgtgcatcagttgaagatattcttcatgctttggtttct
tcattgattcagctatgtccatcctcatgttattctctcaaaaaacttggtatatatgga
atagaatccatagaagggatggaagaaaataatgatagcttcaatgatgatccttgggct
attgctggacttgttcttggtctggggaactctgttgttgctctgtatagacttggagct
tatgacactgttattgaagtcaaggacatattgatatcatggataccaaatgtcagttca
agctgtgcattatttgatgaaatgaattcagtatcactttgtattggctcatgtcttgct
cttccttctgtggtggcattttgccaaagagtggagttgatgaatgaggacttggatgca
ctgttcaatcgctacacttctttagcttctgagctcctaaacctcaataaatctggaatt
ctctttcagaatttattgatggcaatctgtattggtgctggatctctcctgtcttttata
ctagatgacgggttgcatgctatggatttcagtgctgttaaaaaacttctagacactctc
agacatatatatacacatccttttcctccccttgttcatttgggaggcatgtttggtgta
gtcaacgcttgtggtgcaggtgcaggggatcttactgggatgtgttcaaaacttatgact
tcgcaaatcaaacatgaggagtcatctttggtgagaggtcctttattggtaagccctatt
ggtgagactctttcaacatctatggtccatgaaatatatcttcttgctaaggatgctgag
gataagaatatacaagataatgctgcatgggccatttcatttcttagaagcaggtggttg
tcaaagaatctgattctttacaatgacaatggttctaatagaagttctggcgatcccagt
caagcttcaagtttttctgaacaaagcttagtttggaacttaagtcgctggttgaatgat
cttaagcttgaaaagccttttgatatggtgccagtaagtacagttggaacagttttaaga
tgtctttctaaagctcctcgattgccaactacagactggggggttattgtacggcggtgc
atgaaagttgaagtgcagattccttataagccaaccgatcagcaagatctaaagtttcta
agggaagaatgcttacatttttctctagctcatgccactcacattagtccccttcttcag
tttttggattatctgactgacatactcagattccgaagattagaaataaacgtgcagtct
attttgctccaacatttgtcacacctaatgaagctcttctccgattcaagattggataaa
ctatatgaggatttaactgaatacttgtattcccccacctcttcatacttgaattactca
tgtgaacagaaaagcatgataagaatgtcgttctgggaaggcatttgcaagtgtttggtg
gatgttgtttctgaagaatctggtggtttctcattcactaaaaaatgcattgaatgcttg
ttgcctctcttgactctccacaatgatggtcaacctgaattcatggatgaatggtctgct
gctctcacgtgtcttaccaatgcccagagcagttggctgggtgatatgctgcaggttcgg
aatgctgctttagtcactgaggaagaacatgttgacgtggcaaaaaagattatcatcaga
gcaagattgtgcgcgactggttgtggttcggtgcatgagctgggtaatataaagacgatg
atattgtgtgcaagagctgatggtgtctggtggagtgtccttgttgagattgctgcagct
ataaactctgttgaaaacagtataaaaaggcagtggcttctggatgcattagagattggc
tgcgttacagctcatccctcaacggtgctacggtttgttggcttgctatgtgatagctgc
tgcatctatatgccacttctcgttgttaattcgagaaatgtactgagtgacttgcctgtc
accctgccttcctttctctccagcagcatttgggatgatttcagggacattgttgcagac
aagctatggttgttgacttctcacatctacacttgggcagaacaattggcgcacggaaat
gacctcactgggcacgatcatattcatagaagtgaaactgagatggctacttttctggcc
aatattctgcgttctacatgcattgcagtcgaagactacttgactgttgataggaagttg
aagcttgcaaaccttgagtcactctga
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