Setaria italica (foxtail millet): 101762062
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Entry
101762062 CDS
T02818
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101762062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sita03021
]
101762062
03041 Spliceosome [BR:
sita03041
]
101762062
03036 Chromosome and associated proteins [BR:
sita03036
]
101762062
Transcription machinery [BR:
sita03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
101762062
Spliceosome [BR:
sita03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101762062
Complex B
101762062
Complex C
U2 SnRNP specific factors
101762062
Chromosome and associated proteins [BR:
sita03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
101762062
TFTC complex
101762062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
CPSF_A
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
101762062
NCBI-ProteinID:
XP_004951951
UniProt:
K3YPD5
LinkDB
All DBs
Position
I:complement(8265115..8270142)
Genome browser
AA seq
1230 aa
AA seq
DB search
MYLYSLTLQRATGAVCAVIGSFSGRDAKKAASGSASTQEIAVARGSTLDLLRLDPETGRL
RTLLSVDVFGAIRSLAQFRLTGASKDYLVVGSDSGRLVILEYSPDRNRLDKVHQETFGKS
GCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAARLTISAPLEAHKSNTLTFSL
TALDCGFDNPIFAAIELEDAESDRDPTGQAANQAQKVLTFYELDLGLNHVSRKASEPIDN
GANLLVTVPGGGDGPSGVLVCCDNFVLYRNQGHPEVRAVIPRRADLPAERGVLIVAAATH
RQKTLFFFLLQTEYGDIFKVDLEHSGDTVTGLRIKYFDTVPVTSAICVLRSGFLLFAASE
FGNHALYQFRDIGRDADVETSSATLMETEEGFQPVFFQPRALKNLMRIDDIESLMPVMDM
RVANLFDEETPQIFTACGHGPRSTLRILRPGLAISEMARSVLPAEPIAVWTVKKNINDML
DSYIVVSFANATLVLSIGETIEEVSDSQFLDTTHSLSVTLLGEDSLMQVHPNGIRHIRED
GRVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDVACLA
IAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSVQNVSSAPESLLFLEVQASVGG
EDGADYPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQAML
CLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALHIFTIERLGET
FNETAIPLRYTPRKFVILPKKKYIAVIESDKGAFNAEEREAAKKECLEASGAVEDGNANN
ADPMENGDGQENGAEDGNTFPDEQYGYPKAESERWVSCIRILDPRSRDTTCLLELQDNEA
AVSICTVNFHDKEHGTLLAVGTAKGLQFWPKRTLAGGFIHIYKFVEDGRSLELLHKTQVE
EVPLALCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFLKTIVSIHTYRDRIYVGDMQ
ESFHYCKYRRDENQLYIFADDSVPRWLTAAQHIDFDTMAGADKLGNIYFARLPKDISDEI
EEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTCLQKACLIPGGGECLIYGTVMGSV
GALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPTLP
ADMQRKIADELDRTPGEILKKLEDIRNKII
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagtctgacgctgcagcgggcgacgggggcggtgtgcgccgtcatcggc
agcttcagcgggcgcgacgcgaagaaggcggcgtccgggtccgcgtcgacgcaggagatc
gccgtggcccggggaagcacgctcgacctcctgcgcttggacccggagacgggccgcctc
cgcacgctcctctccgtcgacgtcttcggtgccatccgctcgctcgcgcagttccgcctc
accggcgccagcaaggactacctcgtcgtcggctccgactccggccgcctcgtcatcctc
gagtactcccccgaccgcaaccgcttggacaaggtccaccaggagaccttcggcaagtcc
ggctgccgccgcatcgtccccggccagctgctcgcggtcgaccccaagggccgcgcgctc
tgcatcgccgcgctcgagaagcagaagctcgtctacgtcctcaaccgcgacgccgccgcg
cgcctcaccatctcggccccgctcgaggcgcacaagtccaacaccctcaccttctccctc
accgcgctcgactgtgggttcgacaaccccatcttcgccgccatcgagctcgaggatgct
gaatctgaccgcgacccaacggggcaggctgcgaaccaggcgcagaaggtcctcaccttc
tacgagcttgacctggggctcaaccatgtctcccgcaaggcctctgagccgattgataat
ggtgccaatcttcttgtgactgtccctggtggcggcgacggtccgagcggggttcttgtg
tgctgtgacaacttcgtgctgtaccggaaccaggggcacccagaggttcgtgctgtcatt
ccacggcgtgctgacctccctgctgagcgtggtgtcctaattgttgctgctgctacacac
aggcaaaagactctgttcttcttcttactacagaccgagtatggtgacatcttcaaggtc
gaccttgaacacagtggggatactgttactgggctcaggatcaaatactttgacactgta
cctgtaacatcagctatctgtgtgctgcgatcgggtttcctcctctttgctgcttcagag
tttggcaaccatgcactttaccagttccgtgacattggccgggatgcagatgtcgagacc
tcttcagcaacattgatggaaacagaggaggggttccagccggtattctttcagccaagg
gcactaaagaacctcatgcgcatagacgacattgagagcctcatgccagtcatggatatg
cgtgttgcaaatttatttgatgaggaaacaccccagatattcacagcctgtggccatggt
ccacgctccacacttcgcatcctgaggcctggccttgccatcagcgagatggcacgatca
gtgctgcctgcagagcctattgctgtgtggactgtcaagaagaatatcaatgacatgttg
gattcctacattgttgtgtcttttgctaatgctacacttgtgctctctattggtgaaaca
attgaagaagtcagtgacagccagttcctggataccactcactcgctttcagtcactctc
ctcggtgaggactctctcatgcaggtccatccaaatggtatcaggcacatcagggaggat
ggccgtgtcaacgagtggaggacgcctggaaagaaaactattacaaaggttggatcaaac
cggctccaggtagtaatcgcactcagtggcggagagctcatctattttgagatggacatg
actggtcagctcatggaggtggagaagcaggacatgtctggcgatgttgcatgcctggcc
attgcaccggtccctgaggggaggcaaaggtccagatttctcgctgtaggatcctatgat
aacaccatccgtatcctctctctggaccctgatgactgcctgcagcctttaagtgtccag
aatgtatcatcagcaccagaatcactcctattcctggaggtccaggcatcagttggtggt
gaggatggtgccgactatcctgccaaccttttcctcaatgctggtttgcaaaatggtgtt
cttttccggacaaatgttgacatggttacaggtcagctatcggacacacgatctcgattc
cttggcctgagacctccaaagctatttccctgtatagttagccacaggcaagcaatgctc
tgcctgtccagccgtccctggctgggctatatacatcaaggtcacttcctcttgacacca
ttgtcctgtgatacgctcgaatctgctgcatccttttcttctgatcagtgctcagaaggt
gttgttgctgttgctggagatgccctacatattttcaccattgaacgcctgggagagact
ttcaacgagacagccatccctctgcgctacaccccgaggaagtttgtgattctaccaaag
aaaaaatatattgctgtcattgagagcgataagggtgcattcaacgcagaagagcgagaa
gctgctaagaaagagtgcctcgaggcttctggtgccgtggaggatggaaatgcgaataat
gcggatccaatggagaatggggacgggcaagaaaatggtgctgaggatggcaacacattt
cctgatgaacagtatggttatccgaaggcagaatcggagcggtgggtttcctgcattagg
atccttgatccaaggagtagggacacgacctgtctgctggaattgcaggataatgaggct
gctgtcagtatttgcactgtgaatttccatgataaggagcacggcactcttcttgctgtt
ggcactgccaagggattgcagttctggccaaagaggacccttgctggtgggttcatccac
atatataagtttgtggaggatgggaggtcacttgaacttctacacaagacacaagtggag
gaagtacctcttgcgttgtgccaattccaaggacggctacttgcaggtgttggttcagtg
ctcagactatatgatctggggaagagaaagttgctcaggaaatgtgaaaacaagcttttt
ctaaagacaatagtgtctattcatacctaccgtgataggatctatgttggcgatatgcaa
gagtcatttcactactgcaagtacagacgggatgaaaaccaactatacatctttgctgat
gacagtgttcccagatggcttaccgcagctcaacatatagattttgacactatggctgga
gcagataagcttgggaatatatattttgctcgtcttcctaaggatatttcagatgagatt
gaagaggacccaactggaggaaagattaaatgggagcaaggaaagttaaatggtgcccct
aacaaagttgaggaaatcgtgcagtttcatgtcggtgatgttgtcacatgtttgcagaag
gcctgtttaattcctgggggaggtgaatgtcttatttacggaactgtgatgggcagtgtg
ggtgcactgcttgcattcacttccagggaagatgttgacttcttctctcacttggagatg
catctccgtcaggagcatccaccattatgtggaagagatcacatggcctacagatctgct
tattttccagtgaaggatgtgatagatggtgatctctgcgagcagtatccgaccctacca
gctgatatgcagaggaagatcgctgatgagctcgacagaacacctggtgaaatcctgaag
aagctagaagacatcaggaacaagatcatctga
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integrated database retrieval system
