Setaria italica (foxtail millet): 101762561
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Entry
101762561 CDS
T02818
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP6-like 2
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101762561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101762561
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
101762561
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
RRP7
Motif
Other DBs
NCBI-GeneID:
101762561
NCBI-ProteinID:
XP_014661207
LinkDB
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Position
IX:19046954..19053457
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AA seq
899 aa
AA seq
DB search
MDAEEASPPPQPPPWAQNKSAAAIDSSSAPLAAAAARLSARSRALPSSRDFHFYNNFPAF
KSPVGAAAAKADASLGVLGAAPLLPARQQPFPGGGDLDDAHDWLVALNDDLLERFGASVD
EFKALREKEEASGRRAASEAGDGDGFQVVYGKKKKKVGDGEEGVERAEAFGASSSVKMAK
DKAAAPGMKAKVPFHIRTIXRPQGVYRIVVDNSTKPFEHALLERSEDGTRPVHPLEKLPI
EQLINRNVPDSEPVKPPALDDTPFTFVEDLKTLEVLATKLKNATEFAVDLEHNHYRTFQG
LTCLMQISTRTEDFIVDTLKLRRYLGDYLREFFRDPTKRKVMHGAGRDIIWLQRDFSIYV
CNLFDTGQASKVLQMDRNSLEHLLHHFCGVTANKEYQAADWRLRPLPDEMIKYAREDTHY
LLYIYDLMRLRLVKESSADSDMLLEVCKRSNEICLQLYEKEQLTDSSYLHLHGLKENELD
ARQLSVLSSLYRWRDGIARAEDESTGYILPNKSLLEIAKEMPVTSGKLKRIVKSKNFDRH
LSTVINTIRDAISASGAFESVAEQLKKGKLEELTMANVKNSSEDTEMIPAVDVDNNEDPS
DESAVVSTVITNVGTASPCMGTVTSEASFGNMHLEDFTPEKNLGTSSGFTGLADKEILSN
GQQQVAKATVQVSKRTTAFGALFGKPAAGRRPNLFPGLSSDQGKSKVDKITSSVVLPFHN
FSGSVKPPSGSLPLKEQVHSEPESVQHSDPACQMEDVIQLDTETDDPQPPESLLDDEHQE
PKVMEMSKSPSDAPSDTEQRFRSLNEERNVHQNQKIPQEPEFRFPVVPFDYAEARENLVC
GEPKAETKKDNAVARPINTDSGDKRRTSNKPGAGEEGNFQHPRRRQAFPPSGNRNFTYH
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggaggaggcctcgccgccgccgcagcccccgccgtgggcgcagaacaagtcg
gccgcggccatagattcctcgtcggcccctctcgccgccgcggccgcccgcctctcggcc
cgctcccgcgcgctcccctcgtcccgcgacttccacttctacaacaacttcccggccttc
aaatcccccgtcggcgccgcggcagccaaggccgacgcctccctcggcgtgctgggcgcg
gccccgctcctcccggcgcggcagcagccgttcccggggggcggcgacctcgacgacgcg
cacgactggctcgtcgccctcaacgacgacctgctcgagcggttcggcgcctccgtggac
gagttcaaggcgctgagggagaaggaggaggcgtcagggcggagggcggcctcggaggcc
ggggacggggacgggttccaggtggtgtatgggaagaagaagaagaaggtgggcgatggg
gaggaaggcgttgaaagagcggaggccttcggggcctccagctcagtgaagatggccaag
gacaaggcggctgcgccggggatgaaggcgaaggtgcccttccacatccgcaccatcncg
cggccgcagggggtgtaccgcattgtggtggacaactcgaccaagccttttgagcatgct
ttgcttgagcggagcgaggatggcacccgacccgtgcacccattggaaaaactcccaatt
gaacaactaatcaacagaaacgttcctgatagtgagcctgtaaagccacctgctttagat
gataccccttttacatttgttgaagacctgaaaaccttggaggtgctagccacaaagctg
aagaatgcaactgagtttgctgttgatctggaacacaaccattataggacatttcagggt
ctgacatgcttgatgcagatttcaacaagaacagaggactttattgttgacactcttaag
cttcgtagatatcttggtgattacttgagagaatttttcagagatccaaccaagagaaag
gtaatgcatggcgcaggtcgtgatataatatggcttcaacgagacttcagcatatatgtg
tgcaacctttttgacacaggccaggcttcaaaggtcttacagatggaccgcaacagcctg
gagcatcttttgcaccatttctgtggagtgaccgcaaataaagagtaccaggctgcagat
tggaggttgagaccccttcctgatgaaatgatcaaatatgctagagaagatacacactat
ctgttatatatatatgacctgatgagattgagactagtgaaggagtcatcagctgacagt
gatatgcttttagaggtttgcaagcgcagcaatgaaatttgcttgcaactatatgagaag
gagcagctgactgattcatcgtatctacatttacatggattgaaagaaaatgagctggat
gcaagacagctgtcagttctttctagtctatatcgatggagagatggcattgcccgtgct
gaggatgagagcactggctatatattaccgaataagagtctacttgagatagcaaaggaa
atgcctgtgacaagtgggaagttaaaaagaattgttaaatcaaaaaactttgaccgccat
ctcagcactgtcattaacactataagggatgccatatcagcttctggtgcttttgagagt
gtagcggaacaactaaagaagggaaagctggaagagttaacaatggcaaatgtgaagaac
agcagtgaagacactgaaatgatccctgctgttgatgttgataacaatgaagatccgagt
gatgaatctgctgtagtttccacagtgattacaaatgttggtactgcttctccctgtatg
ggaactgttacaagtgaagcttcattcggtaatatgcatttagaggacttcacaccagaa
aagaacttggggacttcgtcagggtttactggactggcagataaggaaatattgagcaat
ggccagcagcaagtagcaaaggccactgttcaagtatcgaagaggactacagcctttggt
gctctgtttggaaaaccagctgctggaagaaggccgaatcttttcccagggctttcaagt
gatcagggtaagagtaaggtggacaagataacgtcttctgtggtacttcctttccataac
ttctctggcagtgtgaaacctccatcaggtagccttccattgaaagaacaagtgcattct
gaaccagaaagcgtccaacacagtgatccagcctgccaaatggaagacgtgatacagttg
gacactgaaacagatgatccgcaaccaccagaaagtctacttgatgatgagcatcaggaa
cccaaagtcatggaaatgtccaagtccccttcagatgccccctctgatactgagcaacgg
ttccggtcactcaatgaagagagaaacgttcatcagaatcaaaagatacctcaagaaccc
gaatttagattcccagtggtgccttttgattatgccgaagccagagagaatcttgtgtgt
ggcgagcctaaagctgagacaaaaaaagacaatgcagttgccaggcccataaatacggat
tctggagataagcggcgaacttcaaacaaaccaggtgctggagaggaggggaatttccag
catccacgaagacggcaggctttcccaccttctggcaatagaaattttacttatcactaa
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