Setaria italica (foxtail millet): 101762771
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Entry
101762771 CDS
T02818
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101762771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101762771
Enzymes [BR:
sita01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101762771
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101762771
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RRM_PARN_C
CoV_S1
Motif
Other DBs
NCBI-GeneID:
101762771
NCBI-ProteinID:
XP_004975901
UniProt:
K3Y5N8
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All DBs
Position
VII:complement(22316478..22321332)
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AA seq
692 aa
AA seq
DB search
MQGCLRRLLRAPPPRALLSRALSSSPPPGGGSGVAVKQVTRGNLAEALEELRGRVREATF
VGLDLEMSGVTSAPWRDTFELDRDDVRYLKLRDSAERFAALQLGVCPFRWDPAKSAFVAY
PHNFFIFPRKELSDCSSHEFLCQTTSIDFLAKYQFDFNTCFREGISYLSRAQEEEALQKL
NFFHQDRPFSSSATSEGDGDMPLKRTADILFTERMKMNFKVWRDVIISQPDSHLSGNIKC
TAGQFQTAFFKMRPAVILNGFSSHQLQLIQQVLRKNFRDLVYVCTFGEDDTSEKRVVYSD
TDEDKILLMKDVHEDLLKSREARVKSAIGIRHVIDLLSSERKLIVGHSCFLDIAQVYSKF
VGPLPSSIKEFALSIHKIFPHIADTRHLMNVNQAVQKLMKHKSKSLSSAFSLLCPSSHSY
AEKPSSLSPVRIEVGGDETTSSCFVSGAKHEAGYDAYMTGCVFAQLCAYLDVKFEQLSPQ
DNLATNNKLQKHINLLSPSWNSGTVLDLSSGQERPDPGYMRRYPAAVYDNIVLIWGFMSK
VRPKEIKDCICKVFGSGSIKTVFSIDSTAALVQFKKQKTVNEFLDLKALLEKTDSAISIL
HPLSTILEGGQTRAVKYDTYRDICSSSELKYLFADQAEAFCATSKNQLQENVDHSLISGV
HQTVLTSVNKGDGTKSGSMNEDDAAILASSIS
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgcagggctgcctccgccgcctcctccgcgcgccgccgcccagggccctactctcccgc
gcgctctcatcctcgccgcctccgggaggcggcagcggggtggcggtgaagcaggtgacg
cgggggaacctggcggaggcgctggaggagctgcgggggcgcgtgcgggaggccacgttc
gtggggctcgacctggagatgagcggtgtcacgagtgctccctggagggacaccttcgag
ctcgaccgcgacgatgtgcggtacctcaagctccgcgactccgcggagcggttcgccgcc
ctgcagctcggcgtctgtcccttccgatgggaccccgccaaatccgccttcgtcgcctat
ccgcataacttctttatcttccctcgcaaagagcttagtgattgttcatctcatgagttt
ctttgtcagacaacttcaattgacttcctagcaaagtaccagtttgatttcaacacatgc
ttccgtgaaggaatatcttatttatccagagcacaagaggaagaagcactacagaaatta
aatttttttcatcaagatcgaccattttcatcttccgccacttccgaaggggatggagat
atgcctttaaagaggacggctgatattcttttcacagaaaggatgaaaatgaacttcaag
gtatggcgtgatgtgataatcagccagcccgatagccatttgtcaggaaacattaaatgc
accgcaggacaattccagacagctttcttcaaaatgcggccagctgttatacttaatggg
ttctcatcacatcagttgcagctaattcaacaggttttgagaaaaaactttagggatctt
gtttatgtctgtacatttggtgaggatgacacatctgaaaagagagtagtttattcagac
accgatgaggataaaatattgctgatgaaagatgtgcacgaagatctactgaaaagcagg
gaagcaagagtcaaatcagcaataggaatccgccatgtcattgaccttctttcatcggaa
aggaagttgattgttggccatagttgtttcctagatattgcccaagtgtacagcaagttt
gttggtcctcttccttcatctatcaaggaatttgccttaagcatccacaaaattttccca
cacatcgcagataccaggcatcttatgaatgtcaatcaagcagttcagaaactgatgaag
cacaaaagcaaatcactgtcttcagctttctcattgttgtgcccttcatctcattcatat
gctgagaagccatccagtctatctcctgtgagaattgaagttggaggagatgaaacaacg
tcttcttgcttcgtttcaggtgctaagcatgaagcagggtatgatgcatacatgactgga
tgtgtttttgcacagttgtgcgcttatcttgatgtcaaatttgagcagctctcacctcag
gataacctagccacaaacaataagctgcagaaacacatcaatcttttgtccccaagctgg
aacagtggaacagttcttgatttaagcagtggccaggagagaccagatccaggttatatg
agaaggtatcctgctgctgtgtatgataacattgttctcatctggggattcatgtctaag
gtcagaccaaaggaaattaaggattgcatctgcaaagtgtttggttcaggatccatcaag
accgtcttctccatcgattccaccgctgcccttgtgcagtttaaaaaacaaaagactgta
aatgaattcttggatttgaaggctcttttagagaagacggatagtgctatctcaattcta
caccccttgtcaactatattagaaggaggccaaacacgagccgtgaaatatgatacctac
agagacatctgcagctcttctgaattaaagtatctttttgctgatcaagctgaagcattt
tgtgcaacttcaaagaatcagctccaagaaaatgttgatcacagtcttatatctggtgtg
caccagacagtgctcacctctgtaaataagggagatggaacaaaatccggttctatgaat
gaagacgatgctgccatacttgccagcagcatatcttag
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