Setaria italica (foxtail millet): 101763296
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Entry
101763296 CDS
T02818
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03440
Homologous recombination
sita03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101763296
03450 Non-homologous end-joining
101763296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sita03032
]
101763296
03400 DNA repair and recombination proteins [BR:
sita03400
]
101763296
DNA replication proteins [BR:
sita03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
101763296
DNA repair and recombination proteins [BR:
sita03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
101763296
BRCA1-C complex
101763296
NHEJ (non-homologous end-joining)
MRX complex
101763296
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
SbcC_Walker_B
SMC_N
Rad50_zn_hook
AAA_29
Nuf2_DHR10-like
DUF1031
ABC_tran
AAA_13
Mucin15
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
101763296
NCBI-ProteinID:
XP_004952522
UniProt:
A0A368PM09
LinkDB
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Position
I:complement(23754884..23771943)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPDNKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNSR
SGHTFVHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAVLENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTFRLKLENLQTVKDQAFKLRENIAQDLEKSDASKS
QMEQLKEKIQGIENEMKHMKTSLDELRRLQGQISTKAAERSTLFTLQQQQYAALSEENED
TDEELMEWQTKFEERIALLETKISKLGREMDDEATKGYLLSQTISELTRDIGKLQAEADA
HMSMKQERDSEIKKIFAKHNFGPVPEFPFTNDVALNLTNRIKARLSNLENDLQEKKKSND
DQLDVLWKHYLKVNARNSEVDGQIQSKIESMSGISRRTKDKEKERDAAEVELSKLNLSRI
DERERHMQIEVERKTLALGERDYDSIINQKRTEIFSLDQKIKALQREKDSINRDADDRVK
LGLKKDALESSKEKLKEMVDEHKDKIRNILRGRLPAEKDMKKEINQAFWPVDKEYNELKS
KSQEAEQEFKLAQSKVSDAREQLTKLRKDLDAKRRFLDSKLQSISQISADIDMFPKVLQD
AKDKRDEQKRLEIYANGMRQMFVPFEQVARDRHVCPCCERAFTPDEEDEFVKKQRMQNAS
TAERVKALAMEYSEAETFFQQLDKLRTVYDDYMKLVEETIPLAEKNLNQRLADESQKEQT
FDDLLGVLAQVKIDRDAVEALLQPTDAIDRHAREIQQLVGEVEDLEYKLDSCGQGVKSLE
EIQQELNSVQRTRDTLSIEVDDLRDQHRMLNEDLASAQVRWHTAREEKIKASNTLGSFKK
AEEELVRLAEEKEQLAVEKKLLEESLDPLSKEKDSLLQEYNALKQRFDEEYHRMAERKRD
FQQELDALGRLNMKIKEYLDSKRAERLNDLQEIHSLKQSELQNCEAKKQGISDELNKSKE
LLQGQGQLKRNIDDNLNYRKTKAEVDRLTRDIELLEERVLSIGSSSTIEADLKRHSQERE
RLNSEFNRCQGTLSVYQSNITKHKQELKQTQYKDIEMRYTNQLLQLKTTEMANKDLDRYY
AALDKALMRFHTMKMEEINKIIKELWQQTYRGQDIDYISINSDSEGAGTRSYSYRVVMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLATALL
RIMEARKGQENFQLIVITHDERFAHLIGQRQLAEKYYRVSKDENQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggtggacaagatgctcatcaaggggatccggagcttcgaccccgacaacaag
aacgtcatcaccttcttcaagcccctcaccctcatcgtcggccccaacggcgccggcaag
acaacaatcatcgagtgcctgaagctgtcctgcaccggcgagctgccacccaactcccgc
tccggccacaccttcgtccacgaccccaaggtagctggagagacggaaacaaaagggcag
attaagctgcggtttaagacagcggcaggaaaggatgtggtgtgcatccgatccttccag
cttacccaaaaggcatcaaagatggagtttaaggcaattgaaagtgttctccagactata
aatccacacacgggcgagaaggtctgtctcagctacagatgtgctgacatggatagagag
attccagccttaatgggtgtttcaaaggctgtactggagaatgttatatttgtgcaccaa
gatgagtcgaattggccattgcaggacccttcaacgcttaagaagaagtttgatgacatt
ttctctgcgacccgctataccaaagctctagaagtcataaagaaacttcacaaggatcaa
gctcaagagatcaagacttttaggttgaagctggagaatcttcagactgtaaaagatcaa
gcatttaagcttcgtgaaaatattgctcaagatctagagaagtcagatgcctcaaaatct
caaatggagcaactgaaggaaaaaatccaaggtatcgagaatgaaatgaagcatatgaaa
acaagtctggatgaattgagaagacttcaggggcaaattagcaccaaagcagcggagaga
agtacattatttacacttcagcagcaacagtatgctgcactttctgaggaaaatgaagat
accgatgaggaactaatggaatggcaaacaaaatttgaagaaaggattgcactactagaa
actaaaatcagtaaactaggaagagagatggatgatgaagcaacaaaaggatacttgctg
tcccagacaatctctgagttaacacgtgacataggaaagctccaggcagaagctgatgct
cacatgtctatgaagcaggaacgagactctgagataaaaaagatattcgccaaacataat
tttgggccagttcctgaatttccctttacaaatgatgttgctctgaaccttacaaacaga
attaaagcgagactctcaaatcttgagaatgatttgcaggagaagaagaaatccaatgac
gatcagttagatgttttgtggaaacactatcttaaagtaaatgctcgcaactctgaagtt
gatggacagatacagtctaagattgaatccatgtcaggtatttcaaggcgcactaaagat
aaagagaaagaacgtgatgctgcagaagtggagctttcgaagcttaatctgtcccgtatt
gacgaaagggagagacatatgcaaattgaagttgagaggaagacacttgcccttggagaa
agagactatgattctattataaatcagaagaggacagaaatatttagtttggatcagaaa
atcaaagcacttcagcgggagaaagatagcataaatagagatgctgatgacagagtaaaa
ctgggtttgaagaaggatgcgttggaaagcagcaaggagaagctgaaggagatggttgat
gagcacaaggacaaaatcagaaatattcttaggggaaggcttcctgctgagaaggatatg
aagaaggagatcaatcaagccttttggcctgtggataaggaatacaacgagttaaaatca
aaatcccaggaagcagagcaggagtttaaactggctcagagcaaggtatctgatgctaga
gaacaattaacaaagcttcgaaaagatttggatgcaaagagaagattcctggactcgaag
cttcaatctatttcacagatttctgctgacattgacatgtttcccaaagttctgcaagat
gccaaggacaaaagagatgaacagaaaagattagagatatatgcaaatggaatgcggcag
atgtttgtaccttttgaacaagtggctcgtgatcgtcatgtatgcccatgctgtgaacgt
gcttttacacctgatgaggaagacgagttcgtaaagaaacaaaggatgcagaatgcaagc
actgcagagagagttaaagctctggcaatggaatactcagaagccgaaaccttttttcag
caactggataaacttcgtactgtctatgatgattacatgaagctggtagaagagactata
cctctagcagagaagaacttgaatcaacgtttggcggacgaaagtcagaaggaacaaaca
tttgatgatcttttgggcgttcttgcccaagttaaaattgacagggatgcagtggaagcc
ttgttacaaccaacggatgctattgacaggcatgcacgtgaaatacaacagctggtcgga
gaagtagaagatcttgaatataaacttgattcttgtggccaaggtgttaaatctttggag
gaaattcaacaggagctaaactccgtccagaggacaagggacacattgagtattgaagtg
gatgatcttagggatcagcacagaatgctaaatgaggatttggcaagtgctcaggtgaga
tggcacactgctcgggaagagaagataaaagcttcaaacacgttgggtagtttcaaaaaa
gctgaagaggaattggtgcgtctagctgaggaaaaagaacaactggccgtagaaaagaag
cttttagaagagtctcttgatccattgtctaaagagaaagatagcttgttgcaagagtat
aatgctttgaagcaaaggtttgatgaagaatatcatcggatggcagaaagaaaaagggac
ttccagcaagaacttgatgcacttggaagactcaatatgaagatcaaagagtacttggat
tccaaaagagcagaaaggcttaatgatttgcaggaaatacactcacttaaacaatctgag
ctacagaattgtgaggcaaaaaagcaaggcatatcagatgaattaaacaagagcaaagaa
ctactgcagggtcagggccagttgaaaagaaacatagatgacaatctcaactacaggaaa
acaaaggctgaagtggatcggcttactcgtgatatagagttacttgaagagagagtgctt
tcaataggcagctcgtctactatagaagctgatctgaagcgtcattctcaagaaagagag
aggcttaattcagagttcaacaggtgtcaaggaacactttctgtttatcaaagtaatata
acaaagcacaagcaagagcttaaacagacacagtacaaggatatcgagatgcggtatact
aatcaacttctccaacttaagacaactgaaatggcaaacaaggacttggacagatattat
gctgctttagacaaggctctcatgcgcttccacactatgaagatggaggagataaataaa
ataatcaaggaactgtggcaacagacatacagaggccaagatattgattacataagcatc
aattctgattctgagggtgctggcactcgatcatacagctaccgtgttgttatgcaaacg
ggtgatgctgagctagaaatgagagggcgatgcagtgctggtcagaaggtgcttgcttct
ctcataatcagactagcactggcggaaacattctgtctgaactgtggcatattggccttg
gatgagccgactacgaatctagatggcccaaatgcagagagccttgctactgcgctgttg
agaataatggaggccaggaaagggcaggagaacttccagctgattgtaatcacccatgac
gagaggttcgcccatcttatcggtcaaaggcagcttgctgagaagtactatcgagtctcc
aaggatgaaaaccagcacagcataattgaagcccaagagatatttgactga
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integrated database retrieval system
