Setaria italica (foxtail millet): 101764527
Help
Entry
101764527 CDS
T02818
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101764527
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101764527
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101764527
U7-dependent histone pre-mRNA processing factors
101764527
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
101764527
NCBI-ProteinID:
XP_004956221
UniProt:
K3ZR17
LinkDB
All DBs
Position
II:complement(15525555..15533417)
Genome browser
AA seq
737 aa
AA seq
DB search
MGTSVQVTPLSGAYGEGPLCYLLAVDGFRFLLDCGWTDLCDTSQLQALAKVAPTIDAVLL
SHPDMMHLGALPYAMKHLGLSAPVYATEPVFRLGLLTMYDHFLSRWQVSDFDLFTLDDVD
AAFQNIVRLKYSQNYLLNDKGEGIVIAPHVAGHLLGGTVWKITKDGEDVVYAVDFNHRKE
MHLNGTVLGSFVRPAVLITDAYNALNNQGYRKKQDQDFIDSLVKVLGSGGSVLLPVDTAG
RVLELLLILDKYWGDRRLEYPIYFLTNVSTSTVDYVKSFLEWMGDHIAKSFESSRANAFL
LKKVTLIINKEDLEKLGDTPKVVLASMASLEVGFSHDIFVEMANEARNLVLFTEKGQFGT
LARMLQVDPPPKAVKVTMSKRIPLVGDELKAYEEEQERIKKEEAIKASLVKEEELKASHG
SNAKASDPMLIDSSSSRKSTKAGSHFGGSNDIFIDGFVPPSTSVAPMFPFFENTAEWDDF
GEVINPDDYTMKQEEMDSTLMLGSGDGLDGKIDDGSARLLLDSTPSKVISNEMTVQVKCS
LVYMDFEGRSDGRSVKSVIAHVAPLKLVLVHGSAEATEHLKMHCAKNLDLHVYAPQIEET
IDVTSDLCAYKVQLSEKLMSNIICKKLGEHEIAWVDAEVGKEDEKLILLPPSSKPPPHKP
VLVGDLKLSDFKQFLENKGWQVEFSGGALRCGEHITVRKIGDSQKGSTGSQQIVIEGPLC
EDYYKIREHLYSQFYLL
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atggggacgtcggtgcaggtgacgcctctcagcggggcgtacggggagggccccctgtgc
tacctgctcgccgtcgacggcttccgcttcctcctcgactgcggatggaccgacctctgc
gacacctcccaactccaagccctcgccaaggttgcaccaactatagatgctgttcttttg
tcacatcctgacatgatgcatctaggagctttgccttatgctatgaaacatcttggactc
tctgcaccagtttatgcaacagaacctgtgtttagacttggccttttgaccatgtacgac
cattttctatctcgatggcaagtctcagactttgacttgtttactttggatgatgttgat
gctgcattccaaaacattgtgagattgaaatactcacaaaattaccttctgaatgataaa
ggtgaaggaattgttattgctccccatgtggctgggcatcttttggggggcacagtgtgg
aagataacaaaagatggagaggatgttgtgtacgctgttgacttcaaccatcggaaagag
atgcatttgaatggtactgttcttggatcttttgtgcggccagctgttctgataactgat
gcttacaacgctttgaacaatcaaggctacagaaagaaacaggatcaagatttcattgat
tcattagttaaagttctaggaagtggtggaagtgtgttacttcctgttgatactgctggt
agagtgttggaacttcttttgatattggataagtattggggtgaccggcgtttggagtac
cctatctactttctgacaaatgtttctacaagtacagtcgactatgtcaagagttttctt
gaatggatgggtgatcatattgcaaaatcttttgaaagcagtagagctaatgccttctta
ttaaaaaaggtcacactgataattaacaaagaagatcttgaaaagttgggagatactcca
aaggtggttctggcgtccatggcaagtttggaggttggcttttctcatgacatatttgtt
gagatggcgaatgaagcaaggaatctagtgctctttactgagaagggacagtttggtaca
cttgctcgaatgcttcaagtggacccaccccctaaagctgtaaaggtcactatgagcaag
cgaattcctttggtgggtgatgagctaaaagcttatgaagaagaacaggaacggatcaaa
aaggaagaagcaatcaaggctagccttgtcaaagaagaggaactaaaggcttcccatgga
tcaaatgcaaaggcttcagacccaatgctcattgattcaagctcatctcgtaaatccacc
aaggctggttcacattttggtgggagcaatgatattttcattgatggatttgtccctcct
tcaaccagtgttgctccaatgtttcccttctttgaaaatactgccgaatgggatgacttt
ggtgaggtcatcaatcctgatgattatacgatgaaacaagaagaaatggatagtactctg
atgcttggttctggagatggtttagatggtaaaattgacgatggttcagcacgcctgctt
cttgattcaacaccctcaaaagttatttccaatgagatgactgttcaagtgaaatgctca
ttggtttatatggactttgaaggtcgctctgatgggcgttctgtaaagtcagttatagct
catgtggctccactgaaacttgttttggtgcatggatcagcggaagctactgaacatttg
aaaatgcattgtgcaaagaatttagacttgcatgtttatgctcctcagattgaggaaaca
attgatgtaacatcggatttatgtgcctataaggtacaactttcagagaagttaatgagt
aacattatttgtaaaaagttgggtgagcatgaaattgcttgggtggatgcagaagttgga
aaagaagatgaaaagcttattctgcttcccccgtcgtcaaaaccgccaccccacaagcca
gttcttgtgggtgatctaaagttgtctgattttaaacaatttctggaaaataaaggttgg
caggttgaattttccggtggtgcattacgatgtggcgaacacatcacggtgcgcaagatt
ggtgactcccagaagggcagcacgggttctcagcagatcgtgatcgagggccccctgtgc
gaggactattacaagatcagggagcatctttattcgcagttctacttgctgtga
DBGET
integrated database retrieval system
