Setaria italica (foxtail millet): 101765271
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Entry
101765271 CDS
T02818
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101765271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sita03021
]
101765271
03019 Messenger RNA biogenesis [BR:
sita03019
]
101765271
Transcription machinery [BR:
sita03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101765271
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101765271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_4
Nitr_red_bet_C
zf-CCCH_3
TFIIA
Motif
Other DBs
NCBI-GeneID:
101765271
NCBI-ProteinID:
XP_004966206
UniProt:
K3XVT8
LinkDB
All DBs
Position
IV:complement(38065479..38072711)
Genome browser
AA seq
637 aa
AA seq
DB search
MDDGDGGLSFDFEGGLDSAPAGGAGGPVPSSTDPGAGGGGGGDGPGMHGRGRGRGSYRQT
VCRHWLRGLCMKGDACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVKECNMYK
MGFCPNGPSCRYKHAKLPGPPPPVEEVLQKILQMRSFNRYGQNRNNNYNQQGERPQHPQG
SGLPNQNSAENATATAPPTGGQQAQITNQQPPQQQQKPNTNDQVQGASNGHQTARIATPL
PQGPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESTENVILIFSINRTRHFQ
GCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSMQWLKLCELSFQKTHHLRNPYNDNLPVK
ISRDCQELEPFIGEQLASLLYLEPDSELTAMLIAAEAKREEEKAKGVSADEAADNQDIVL
FDDNEEEEEEESEEEEESNGQESQGRGRGRGMMWPPQMPMMRGPMMGGRFPPNMIGDGFG
FGGGFGMPDPFGMPRGFPPFGGPRFPGDFPRGPMPGMAFPGRPPQPFPLGLDMMMGPGRG
PMMGGMGMGGPGRPNRPMGMAPFMPPPPPNNRAAKREQRRPGGDRFETVSDQGSRGHENS
GADGARSQSGDRYSRSALRDDDSESEEEAAPRRSRKR
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgacggcggcctgagcttcgacttcgagggcggcctcgactccgccccg
gcgggcggagccggcggtcccgtgccgtcctccaccgaccctggcgcgggcggcggggga
ggcggcgacgggccgggcatgcacgggcgcggccgtggccgcgggagctaccgccagacc
gtgtgccggcactggctgcgcggcctctgcatgaagggcgacgcgtgcgggttcctgcac
cagtttgacaaggcccgcatgcccgtctgccgcttcttccgcgacttcggcgagtgccgc
gagcccgactgcgcctacaagcactcgtacgacgacgtcaaggagtgcaatatgtacaag
atggggttttgtcccaatggccctagttgccggtacaagcatgccaagctacctgggcca
ccgcctcctgttgaggaagttctacagaagattttgcagatgcgctctttcaacagatac
ggtcagaatagaaacaataactataatcagcagggtgagagacctcaacatccacagggt
tctgggttgcctaaccaaaactcagcagaaaatgctactgctacggctccaccaactggt
ggacaacaagcacaaattacgaatcaacagccaccacagcagcagcagaagccaaataca
aatgaccaggtccaaggtgcttcaaatggccatcaaactgctagaatcgcaacacccctt
ccgcaagggccatctaggtactttattgttaaaagttgcaatcgggagaatctggaaata
tcagttcagcagggaatttgggctacccagaggagtaacgaggctaaacttaatgaagct
tttgaatccactgagaatgttattttaatattctcaattaatagaactcgccatttccag
gggtgtgcaaagatgacttctaggattggtggctacattggtggtggaaattggaaatct
gctcatggaacagcacattatggtcgaaacttctctatgcagtggcttaagctttgtgaa
ctgtcatttcagaaaactcaccatctccgcaatccatacaatgataatctccctgttaag
atcagcagagattgccaggaactagaacctttcattggtgaacagttggcttcgctgctt
tatctggagccagacagcgaacttacggctatgctgattgcagcagaggctaagagagaa
gaggaaaaggcaaagggagtcagtgctgatgaggcagctgataatcaagatatcgtgctg
tttgatgataacgaagaagaggaggaagaggaaagtgaggaggaagaagaaagcaacggc
caagagtcacaagggaggggaagagggagggggatgatgtggccccctcaaatgccaatg
atgcgtgggccaatgatgggagggcgtttccctcccaacatgatcggcgacggctttggt
ttcggcggtggcttcggcatgcctgatccgttcggcatgccgcgcggtttcccacccttt
ggtggcccaaggtttcccggtgactttcctagaggccctatgcccggtatggccttcccg
ggcaggcctccgcagcctttccctctgggccttgacatgatgatgggccccggccgtggc
ccgatgatgggaggcatgggaatgggcgggcctggacggcctaaccgtcccatgggtatg
gcacccttcatgcccccgccacctccgaacaaccgcgccgcgaagcgggagcagagaagg
ccgggcggcgacaggtttgagacggtgtcggaccagggcagcaggggccacgagaactct
ggagctgacggagccagatcgcagtccggcgacaggtacagtagaagcgccctccgggat
gatgacagcgagagcgaagaggaagcggctcccaggcggtcaaggaaacggtag
DBGET
integrated database retrieval system
