KEGG   Setaria italica (foxtail millet): 101765919
Entry
101765919         CDS       T02818                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
sita  Setaria italica (foxtail millet)
Pathway
sita03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sita00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    101765919
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sita03019]
    101765919
Messenger RNA biogenesis [BR:sita03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     101765919
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR3_2nd WD40_WDHD1_1st WD40_MABP1-WDR62_2nd WD40_Gbeta WDR55 ANAPC4_WD40 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_EIPR1 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_Vps41 Beta-prop_TEP1_C eIF2A WDR90_beta-prop_4th Beta-prop_SPT8 WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Ge1_WD40 Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_WDR35_TULP_N CFAP43_N Beta-prop_DCAF4 Beta-prop_VPS8 Beta-prop_WDR11_1st Beta-prop_HPS5 Beta-prop_RIG_1st WD_LRWD1 Beta-prop_WDR11_2nd Beta-prop_ACSF4 Beta-prop_pof12 WD40_like Beta-prop_IFT80_2nd
Other DBs
NCBI-GeneID: 101765919
NCBI-ProteinID: XP_004979897
UniProt: K3ZJ87
LinkDB
Position
VIII:37554902..37558117
AA seq 322 aa
MKLAGLKSVDGAHEESIWAAAWAPAADHRPTAVLLTGALDETVRAWRPDDLAAAGPPARG
HALGVVSLAAHPAGALAAAVSLDSFVRVFDVDSGASVATLEAPPSEVWGVQFHPKGNALA
AAGGGSGSVKLWDTEKWQPITSLAVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSMD
GTIAVYDAIRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTACDDCHIHIYDAKEKTLIGAM
SGHASWVLSIDVSPDGLAVATGSSDRTVRLWDINMRSSMQTMSNHSDQVWAVAFRPPGGA
GVRAGRLASASDDKSISLYDYS
NT seq 969 nt   +upstreamnt  +downstreamnt
atgaagctcgcggggctcaagtccgtggacggtgcccacgaggagtccatctgggcggcg
gcgtgggcgcccgccgccgaccaccgccccacggcggtgctcctcacgggggctctcgac
gagaccgtccgcgcctggcgccccgacgacctcgccgccgcgggccctcccgcgcgcggc
cacgcgctcggggtagtctccctcgccgcccaccccgcgggcgcgctcgccgccgccgtg
tcgctcgacagcttcgtccgcgtcttcgacgtcgactcgggggcatccgtcgccacgctg
gaggcgccgccgtccgaagtctggggcgtccagttccaccccaagggtaatgcgctggct
gcagctggtggtggcagtggatcagtgaagctctgggacacagagaagtggcaaccaatt
accagccttgctgtcccacgtccagagggagctcgccctgacaagacaggcagtggcaag
tttgtcctttcagttgcctggagccctgatggaaagctcttagcctgtgggtccatggac
ggcaccattgctgtgtacgatgcaatccgcatgaagttcctccaccacctggagggccac
cacatgcctgtgcggtccatggtcttctcccctgtggacccccacgtgctcttcacggcc
tgcgacgactgccacatccacatctacgacgccaaggagaagaccctcatcggggccatg
tcaggccatgcgagctgggtgctgagcatcgacgtgagccctgatggtttggcagtggcg
acgggatccagcgaccgcactgtccggctctgggacatcaacatgaggagctctatgcag
acgatgagcaaccactctgaccaggtctgggccgtggctttccgaccgccgggtggggct
ggagtccgtgcaggccggcttgccagcgcctcggatgacaagagcatctccctgtatgat
tactcgtag

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