Setaria italica (foxtail millet): 101766663
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Entry
101766663 CDS
T02818
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03420
Nucleotide excision repair
sita04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
101766663
09124 Replication and repair
03420 Nucleotide excision repair
101766663
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sita04121
]
101766663
03400 DNA repair and recombination proteins [BR:
sita03400
]
101766663
Ubiquitin system [BR:
sita04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
101766663
DNA repair and recombination proteins [BR:
sita03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
101766663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_EML
NBCH_WD40
ANAPC4_WD40
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_Nup120_160
WDR54
Beta-prop_Vps41
Beta-prop_WDR75_2nd
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
101766663
NCBI-ProteinID:
XP_004970639
LinkDB
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Position
V:41944738..41947835
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AA seq
452 aa
AA seq
DB search
MWLEEVRGRERGELRARRFEAAARARRAASLALSNRKEFATPHHGAVNSLQVDLTEGRYL
LSGASDGSAAVFDVLNATDCEAGFIAKHKHILLVDKQHQNGHKFAISAAVWYPVDTGLFV
TASFDQYVKVWDTNSTQVVMDFKMPGKVFTAAMSPIATTQMLIATGSADVQVRLCDIASG
AFTHTLSGHRDGIMSLEWSASSEWILMSGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRP
PLLKSTPENQDHIDSLGHSTSTRSSAQKRTRNSKNSPKLRKSQNLTQGHMQQRLHPGLSS
SQNRATSHYGAVTGLRTTKDGMYLLSSGSDSRLRLWDIDSGCNTLVNFEAMRLQTGKPLQ
LAVTEDPSLVFVPCMASIKAYNLWSGMTFRAFRGHYELVNCCYYSEQDQELYTGSNDRQI
LVWSPSTPAFTEMEDDEKRQGLSAADEDNWSD
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtggttggaggaggtgagggggagggagcgcggggagctgcgcgcacggaggttcgag
gccgccgcacgggcgcgccgcgcggcctcactcgcgctctccaaccgcaaggagttcgcc
accccgcaccacggcgccgtcaactcgctccaggttgatttgacagaggggaggtacctg
ctctccggggcatcggatgggtcggccgctgtattcgatgtgttgaacgcgaccgactgc
gaagccggcttcatagcgaagcacaagcacatactgcttgtggacaagcagcaccagaat
ggccacaagttcgccatctctgcggccgtttggtatcctgtggataccgggctgttcgtc
acagcatcctttgatcaatacgtcaaagtttgggataccaattcgactcaagttgtcatg
gattttaagatgccaggaaaagtctttactgcagccatgtctccaattgcaacaacacaa
atgctcatcgctactgggagtgcagatgttcaggtccgtctgtgtgacattgcttctgga
gcctttacccacacattgtccggtcaccgtgatggtatcatgtctttggaatggtctgct
tcaagcgagtggattttgatgagtggtggctgcgatggcgcgatacgtttttgggacatt
agacgagctgggtgctttcgtgttcttgatcagtcacagtctcagcttggaaggaggcct
cctcttcttaaaagcacaccagagaatcaggatcacattgattccttaggacattcaact
tccacaaggagctcagctcagaaaagaactagaaattctaagaactcaccaaaattgcgc
aaaagccaaaacctgacacagggacatatgcaacagagattgcaccctggtttgtcatcc
agtcaaaaccgtgccacatctcattatggtgctgttactggattacgaacaactaaagat
gggatgtaccttcttagctcaggttctgattctcgtttaaggctatgggacatcgattct
ggatgcaatactttggtcaattttgaagctatgcgattgcagactggcaagccgttacaa
ttagcagtcactgaggatccgtcacttgtatttgttccatgcatggcaagcatcaaggca
tacaatttatggtctggtatgacatttcgggcattccggggtcactacgaacttgtgaat
tgctgctactacagcgaacaggaccaagaactttatactggcagcaatgatagacagatt
cttgtatggtctccatcaactccagcttttactgaaatggaagatgatgagaagcggcaa
gggctttctgcagctgatgaggataactggagcgactaa
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