Setaria italica (foxtail millet): 101766793
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Entry
101766793 CDS
T02818
Name
(RefSeq) probable CCR4-associated factor 1 homolog 9
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101766793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101766793
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101766793
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101766793
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
101766793
NCBI-ProteinID:
XP_004986798
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All DBs
Position
IX:36581135..36582082
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AA seq
315 aa
AA seq
DB search
MIPAGAFYHPQGQPPFAIAMTAPAASYSAAVPMQALPTAWYHATVPIMQGPPPMPRPFGV
TVRSVWADNLGAVRLDMGYFAAHARCVAVKVHYPGVVVHGAGGQQDPGAEKRYAVVKANV
DALKPLQVGLAVCTDDGRVAAWEFNLSDFDPAADPHAAQSLLHLQSRGLNCLEHRLRGIP
MEELAMLLRFSGLLGNRPGVSWVTHTGAYHLAYLMKVINGGKPLAGDMDGFLGSVRRSLG
EDVYDVATMAADCPDMPVGLEHIAGKLRLPPPLSTNPLAGAGSVLALEAFLKLKPQRFRD
DVTRYRGVLQGLHTI
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgatccccgccggagcgttctaccacccgcaggggcagccgcctttcgccatcgccatg
actgcgccggcagcttcgtactccgccgccgtccctatgcaggcactgccgacagcttgg
taccacgccaccgtccccatcatgcaggggccgccgccgatgccgcggccgttcggcgtc
accgtccgctcggtgtgggccgacaacctcggcgccgtgcggcttgacatgggctacttc
gcggcgcacgcgcgctgcgtcgccgtgaaggtccactaccccggcgtcgtcgtccacggc
gccggcggccagcaggaccccggcgcggagaagcggtacgccgtcgtgaaggcgaacgtg
gacgcgctcaagccgctccaggtcgggctcgccgtctgcaccgacgacgggcgggtcgcc
gcctgggagttcaacctgtccgacttcgacccggccgccgacccccacgcggcccagtcc
ctcctgcacctccagagccgcggcctcaactgcctcgagcaccgcctccgtggcatcccc
atggaggagctcgccatgctgctccgcttcagcgggttgctgggcaaccggccgggggtg
tcgtgggtcacgcacaccggagcttaccacctcgcgtacctgatgaaggtaatcaatggt
ggtaaaccacttgccggcgacatggacgggttcctgggttcggtgcggaggtctcttggc
gaggacgtctacgatgtggcgacgatggccgctgactgcccagacatgccggtggggctg
gaacacatcgcgggcaagctcaggttgccgccgccgctgtccacgaacccgctcgcgggc
gccggcagcgtgctcgctctagaagcgttcttgaagctcaaacctcagaggttccgagat
gacgtgaccagatacagaggcgtcctgcaaggactgcacactatctga
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