Setaria italica (foxtail millet): 101767224
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Entry
101767224 CDS
T02818
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
sita
Setaria italica (foxtail millet)
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sita03036
]
101767224
Chromosome and associated proteins [BR:
sita03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
101767224
microRNA pathway
RISC loading complex
101767224
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
dsrm
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
101767224
NCBI-ProteinID:
XP_004970995
LinkDB
All DBs
Position
V:complement(44378243..44388684)
Genome browser
AA seq
1662 aa
AA seq
DB search
MGAADSAAEAAVAADVDMNPLKRTSESSVQEDEGVHKQQKRECQDFTPRRYQLDLYEVAT
RQNTIAMLDTGAGKTMIAVMLIKHFGKISKTNNDRKLIIFLAPTVQLVTQQCEVIKSYTD
FEVEHYHGAKGVDQWKAYNWQEQLAKYQVMVMTPQVLLDALRQAFLVLDMVSLMIFDECH
HATGNHPYTRIMTEFYHRSEHKPNVFGMTASPVIRKGVSSDMDCENQLSELENILDSKIH
TVLDREEIELCVPSAKEVNRYYEPRTVSFEDLSEELGILCSKYDGLIAQLYSRLTNQYKD
ADEITKESRRRLSNSLAKICYCLEDVGLLCASEATKICIERGHRKGWLKGGGDTTDQQSD
ANGPGLFAENSMLHMKFFEEALHIIDKRLQQQQGIDALLNSESGCVEAIKGGYISPKLHE
LIQIFLSFSDVEHVRCLXFCGPKITARVIERTMKKIGRLPYFRVSFLTGGSSSVDALTPK
MQKDTLDSFRSGEVNLLFTTDVAEEGIHVPDCSCVVRFDLPKTTRSYVQSRGRARQKDSQ
YILMIEQGNVKQNDLISSLMRSKTLMAEIASNREPEDSHPSFFPIPTEEINEYHISTTGA
KITTDSSISVLYQYCDKLPKDKYYTPRPTFQFSQYGDGYECTVTLPSSAMFQLLVGPKAR
NMQKAKQLVCLDACKRLHQLGALDDHLSPSAEELPLEILSKTSTCTSGAGLGTTKRKELH
GTTKVLSMSGSWASDRSVTKLQGYTMNFICDQVGQKYSDFVLLIDANIAKEAATLDIDLY
LHDKMVKASVSPCGSLELDAQQMEQAKLFQALLFNGLFGKLFTGSKASKTAREFILKKDN
TFLWDKANMYLLLPVDPTLDSAKSVCINWSVIEVAATAVGLMRSIYSEDQQNLIDKLNPE
KNGGDLIHLANKSCKADDLRNMVVLALHTGKIYTSLDVSDLCASSTFDGASDKKEAKFRT
FAEYFEKKYSVFLHHPSQPLLVLKPTHNPHNLLSSKIRDEGNRVENKNRANSLVHMPPEL
LIPLDLPVDVLRVFYLFPSLMYRIESLMLASQLRSEIAYTGSDISSFLILEALTTLRCCE
DFSMERLELLGDSVLKYAVSSHLFLTFPNKHEGQLSSRRQEIICNATLHKLGIESKIQGY
IRDAAFDPRRWLAPGQLSIWPCPCECPVNSEVVTEDIHRIDDKSIIIGKACDKGHRWICS
KTISDCVEALIGAYYVGGGLRAAFSVLKWLQIEIETEEDLIVKAMSSASVWNYLPKVDVV
ELLEAKIGYAFSVKGLLIEALTHPSQQESGATYCYQRLEFLGDAVLDILLTRHLFLSHKD
IDEGELTDLRSASVNNENFAQVAVKYNLHHFLQHSSGLLQDQINEYVNGLEGSSMDRTSL
LSSGPSRGPKVLGDIVESIAGAVLIDTKLDLDLVWGVFKPLLSPIVTPENLELPPFRELH
EWCDKSGYFLGIKCENRGDNIMAILNLQLKDLLLARQGHGKNKVDAKAHAASLLLRDLEE
KGLVIPKNASRTEQSDSPKHHSNLLDAMDTQNIAPPRQKELTVSSTVPGSVIDEPLVVKV
KLSKGGPRISLYESCKKLQWPMPTFEYVKVKPSVCPSSDGSSQKAAPQGFAFSSIITLHI
PNGDVISLTGDGRADKKSSQDSAALLMLYELQRRGRFQVQEV
NT seq
4989 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccgccgattccgcggcggaggcagccgtcgccgccgatgtagacatgaatcct
ttgaagaggacatccgaatcatccgttcaagaagatgaaggcgtgcataaacagcagaag
agggagtgtcaggatttcacccccagaaggtaccagcttgatctttatgaggttgctacg
cgtcagaacacgattgctatgcttgatacgggagctgggaagacaatgattgctgtcatg
ctcatcaagcattttgggaagatcagcaaaacaaataatgaccgaaagctcatcatattc
cttgcgccaacagttcaacttgtcacgcagcaatgtgaggtgattaagagctacactgat
tttgaggtggagcactatcatggtgcaaagggtgtcgatcaatggaaggcttacaactgg
caggagcaacttgcaaagtatcaggttatggtcatgacaccacaggtgctgctagatgct
ttacgccaagctttcctggtcttagacatggttagtctcatgatatttgatgaatgccat
catgcaactggtaaccacccttatacaaggataatgacggagttctatcacagatctgag
cataagccaaatgtgtttggtatgacagcatcacctgttataagaaaaggagtctcctct
gatatggattgcgaaaatcagctctctgagctggaaaatattttagattccaagatacac
actgtgttggatagagaagagatagaactttgcgttccttcggcaaaagaagtgaacaga
tactatgagccaagaactgtttcttttgaagatttaagtgaagaactaggaattttgtgt
tccaagtacgatgggctgatagcacaattgtacagtaggctgaccaaccagtacaaagat
gctgatgaaataacaaaggaatcacggaggcgtctctctaattctttagcaaagatttgc
tattgccttgaagatgtcggtcttctttgtgcgagtgaggctactaaaatttgcatcgaa
aggggtcacagaaaaggttggctgaagggaggcggtgacaccaccgatcagcaaagtgat
gcaaatggaccaggcttgtttgcagaaaattcaatgcttcatatgaagttctttgaggaa
gcgttgcatataattgacaaacgcctccaacagcaacaaggaattgatgcacttctgaac
tcagagagtggatgtgtggaagcaataaaggggggctatatctcgccaaagctccatgag
ctcatccaaatatttctctctttcagtgatgttgaacatgtccgatgccttnnattttgt
ggaccgaagattactgccagagtcattgagcggactatgaagaaaattggccgactccca
tatttcagagtctctttcctaactggtgggagttcttctgtggatgcactgacccctaaa
atgcaaaaggacacactggattcattccgctctggagaggtcaacttactatttactaca
gatgttgcagaagagggtatccatgtcccagactgctcgtgtgtagtacgatttgatttg
ccgaagactacccgcagctatgtgcagtcacgtgggcgagcccgacaaaaggactctcag
tacatactaatgattgaacagggaaatgtaaaacaaaatgatttaatatcttcccttatg
agaagtaagaccttgatggccgagattgcttcaaaccgagagcctgaggattcacacccc
agtttctttcccattcccacagaagaaataaatgagtaccatataagcacaacaggagcc
aaaataactactgattccagcatcagtgttctctaccagtactgtgacaaacttccaaag
gacaagtactacaccccaagacccacgtttcagttcagccagtatggtgatggctatgag
tgtacagtaacattaccatctagtgccatgtttcagcttttagtaggcccaaaagcaaga
aacatgcagaaagcaaagcagcttgtttgccttgatgcatgtaagaggctgcatcagctg
ggagcacttgatgaccacctttctccatcagctgaagagctgccactggaaattttgagc
aagactagtacctgcacgtctggtgcaggtttaggtacaaccaaacggaaagagctgcat
ggtacaaccaaggttctttctatgtctggctcttgggcttcagacagaagtgttactaag
cttcaaggctacacgatgaattttatttgtgatcaagttggccagaaatattctgacttt
gtcctgttaattgatgcaaatatagcaaaagaagctgctactttggatattgatctgtat
ttgcatgacaagatggtaaaggcttcagtgtctccctgtggatctcttgagttggatgct
cagcagatggaacaagcaaaactatttcaagcacttctctttaatggtttgtttggaaaa
ctgttcactggatcaaaagcatccaaaaccgcaagggagtttattctcaagaaagataat
acattcctgtgggacaaagcaaatatgtatttgcttttacctgtggatcctactctggat
tctgctaaaagcgtttgcattaactggagtgtgattgaagtagcagctacagccgttgga
cttatgaggagcatttattcggaggaccaacagaacctgattgataaacttaatcctgaa
aaaaatggtggagatctgattcatttggccaacaagtcatgtaaggctgatgatcttaga
aatatggtagtcctagcacttcacacagggaagatatatacttctcttgatgtatctgat
ttatgtgcgagtagcacatttgatggtgcttctgataagaaagaagcaaaattccggacg
tttgcagaatactttgagaagaagtacagcgtatttcttcatcatccctcacagccattg
ctagtgttgaaacccactcataatcctcacaaccttctttcttccaagatcagagatgaa
ggcaaccgtgtggaaaataaaaatagggcgaatagccttgttcacatgcctccagagctg
ctgattccccttgatttacctgttgatgttttgagagtattctatttgtttccatccctg
atgtatcgcattgagtcactaatgctagccagccaattaagaagtgaaattgcatacaca
ggttctgatatatcaagcttcctgattctggaagctcttacaacccttagatgctgcgag
gacttctctatggagcgtttagagttattgggggattctgtacttaagtatgcagtgagt
tcccatcttttcctcacatttcctaataagcatgaggggcagttgtcgtccagaaggcaa
gaaattatatgtaatgcaacacttcataagcttggtattgaaagcaagatacagggttac
atacgtgatgctgcatttgatcctcgtcgatggcttgcacctggacagctgtctatttgg
ccatgtccttgtgaatgcccagtaaattctgaggttgtaactgaggatattcataggatt
gatgacaaatctataattataggcaaggcgtgtgacaagggacacagatggatatgttcc
aaaaccatctctgattgtgtcgaggctttaattggggcatattatgtgggagggggatta
agagcagccttttctgttctcaaatggttgcagattgagattgaaactgaggaagacctg
attgtgaaagccatgtcgagtgcttctgtgtggaattatctgccaaaagttgatgtagtt
gaattgcttgaagcaaaaataggctatgctttttcggtgaaaggtttgctgatagaggct
ctcacccacccatcacagcaagaatcaggagcaacatactgctaccagcgcttggagttc
cttggagatgcagtcttggatattttactaacacgccatcttttccttagtcataaagac
attgatgagggggagctgacagatttacgatctgcatcagtaaataatgaaaattttgca
caagttgcagtgaagtacaatctgcaccactttctccagcattcttctgggctccttcaa
gaccaaatcaacgaatacgtgaatggtctggaaggttcatccatggacagaaccagcctt
ttatccagtggaccatctagggggccaaaagttctaggtgatattgtagaaagtattgca
ggtgcagtccttatagacaccaaacttgatttggatctagtttggggggttttcaaacct
cttctttctccaattgtcacacctgagaatctggagttaccccctttcagagaacttcat
gagtggtgtgacaagagtgggtactttttgggaattaagtgtgaaaatcgaggagacaac
ataatggctattctcaatttacaactcaaggatttgcttcttgcaaggcaaggtcatgga
aagaacaaagtagatgcaaaagcacacgcagcttccttattgctcagggatctggaggaa
aaagggcttgtaattccaaagaatgctagcagaacggaacaatctgatagtccaaaacat
cacagcaacttgcttgatgctatggacacacagaatatagcaccaccaaggcaaaaggaa
ttaaccgtgtcaagtactgttcctggctctgttattgatgaaccattggttgtgaaggtt
aagttgagtaaaggaggtcctcgtatatcattgtacgaatcatgtaaaaaactacagtgg
ccaatgcctacatttgaatatgtgaaagtcaaaccaagcgtgtgcccctcatctgatggt
tcctcacaaaaggctgcgcctcaaggattcgcattttcttcgataataacattgcacata
ccaaacggcgatgtcatcagcctcacaggagatggacgtgcggataagaagagctcacag
gattcagctgcgctgctcatgctctatgagctgcagcggcgaggtagattccaagtccaa
gaagtatga
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integrated database retrieval system
