Setaria italica (foxtail millet): 101768172
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Entry
101768172 CDS
T02818
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101768172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101768172
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101768172
mRNA degradation factors
5'-3' decay
Decapping complex
101768172
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
101768172
NCBI-ProteinID:
XP_004953740
UniProt:
K3YPB5
LinkDB
All DBs
Position
I:complement(36658800..36666660)
Genome browser
AA seq
1337 aa
AA seq
DB search
MASPTGNPNPNPNPPFELGKLFRPPNPMPTATATAATIFPGAAGGPAGPPPPSGPYSYPP
VTPPFHRGPYLHYPQDPHAMPRPVVSFPMPNPNLNPNPNANPNAAVPGPNPGVRLMQLLG
NSGPTQLETAVSMPPPTSEFAQPLPAMPSAPPARMLSSTSSKVPRGRLLGGGERAVHDID
SRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSL
LRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWRIDEGPDDENKPQITGKIEIAIQIVGE
VEAYHPRICWHSHKQEILFVGIGNCVLRIDTTRVGRGRDFAVEEPVKCHLEKLIDGVRLV
GKHDGDVTDLSISQWMSTRLASGSKDGMVKIWDDRKPNPLSILKPHDGQPVYSVAFLTAP
ERPNHINLITAGPLNREIKIWASTNEDGWLLPSDSESWNCTQTLELVSSLEPRVEEAFFN
QVAVLPQASLILLANAKKNAIYAVHVDYGPDPASTRLDYIADFTVAMPILSLTGTHESQP
DGEQVVQVYCVQTMAIQQYGLELSLCSPPTADTTGFGRDPAISRVYEAPPEVAGTESSTT
SFTDSYSVSASSKPPTADQSAEFDPKPSAPPLAYSEGDGSVHLPSAPPASKMELPGSGPA
PGTRDIDQSAFDYTANRNMERDALKRQDTPMPIRKDILGKDELRDGHSDVAMLPNPRLMF
QVGGNATHLVTPSEIISGTLSSAENNDVSKSDGGKIQDVSSRSSRIAELEPKHIDESKPD
QNSGLEAVKEAQIVCEHMEKTRSLEQTVEMISERSVTTDKYSVEESQAPSDKPTLDHTGV
ADENVRKNSLEMPEKSDYSASREQSSSYTKEEKVLHPQTSGQPSPSVSAFNSTESHEPLS
SAYPPISSFPEVAATQGMLQQLIGMQKDMEKKLDTMIPVSVAKESKKLETSLGRTMEKSI
KAHFDAFWVRLQEENTKREKADRERMQQLVTLITSSINKDVPSNLEKSLKKEISSLGPVV
ARAITPIIEKCIASAVSDSVQKGVGDKVCNQLDKSISGKLEATLARQIQMQFHTSVKQAL
QDALRTSFESLLVPAFEQSCKTMFEQVDGTFQKGMSEHTVAIQQQLEAAHTPLALTLKET
INSASSITQSFSSELLDGQRKLLALVASGNAKAHTPNALQPINGPMGGPQEVKVEAPLDP
MKELGRLVSERKFDEAFTMALQRSDVSIVSWLCSQVDLRALLAMVPVPLNQGVLLALLQQ
LAVDINNETSRKVQWMTDVAMAINPADPMIAVHVRPIFDQVYSQLAHQRSLPTMSSSDGT
SIRMLMHVINSVLLSYK
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctcccaccggcaaccctaaccctaaccccaatccaccattcgagctcgggaag
ctcttcaggccaccgaaccccatgcccaccgccaccgccaccgccgccaccatcttcccc
ggcgctgccggaggccccgcgggcccgccgccgccgtccggtccctactcctaccctccg
gtgaccccgcccttccaccgcggaccctacctgcactacccgcaggacccccacgccatg
ccccgccccgtcgtctccttccccatgccaaacccaaacctcaaccccaacccgaacgct
aaccccaacgccgccgtcccgggccccaaccccggcgtgcgcctcatgcagctgctcggg
aactccgggccgacccaactcgagaccgcagtctccatgcccccgccgacttcggagttc
gcgcagccgctcccggcgatgccatccgcgccgccggcgaggatgctgagcagcaccagt
agcaaggtgcccagggggcggctgcttggcggtggggaacgagcggtacacgatattgac
tcgaggctgcccggggaggcgcagccaccacagctggaggtgacaccgatcacgaaatac
acgtcggatccggggctcgtgctgggcaggcagatcgcggtgaaccgaacctacatcgtg
tatggtctcaagctcgggaacatccgtgtgctgaacatcaacaccgccctccgctccctc
ctccgtggccacacacagagggtgacagacatggctttctttgctgaggatgtccatcgt
ttggcaagtgcgagtgtagatgggcggatatatgtgtggaggattgatgagggacctgat
gatgaaaataaaccacaaattactggaaagattgaaattgccatccaaattgtaggcgaa
gttgaagcttaccatccaaggatatgttggcactcacataagcaagagattctgtttgtt
ggaattgggaactgtgtcttaagaatagacacgactagagtgggaagaggaagagacttt
gctgtggaagaacctgttaaatgtcatcttgagaagcttattgatggtgttcgcttagtt
ggtaagcatgatggtgatgtgacagatttgtccatatctcaatggatgagtacccgcttg
gcctcaggatcaaaggatggcatggtaaagatctgggatgatcgcaaaccaaatccttta
tccattctgaagccacacgatggtcaacctgtttactcagttgcttttcttacagcacct
gagcgtccaaatcatataaatctaattacagcgggtcctctgaaccgagaaattaaaatt
tgggcttctactaatgaagatggttggttgttgccaagtgattctgagagttggaattgt
actcagaccttggaacttgttagttctctggagcctagagtcgaggaggcatttttcaac
caggtcgcagtgctgcctcaagcaagcctgattttgcttgcaaatgctaaaaagaatgct
atttatgctgtccatgttgattatggcccggatcctgcctctactcgcttggactatata
gcagatttcacagttgcaatgcctattttaagccttactgggacacatgaaagccaacct
gatggtgaacaagttgttcaagtctattgtgtccaaacaatggccattcagcaatacgga
ctagagttatcactctgttcgcctcctacagctgatactactgggtttggaagagatcca
gctatttcccgtgtttatgaggcaccaccggaagtggcaggaacagagtcatctacaact
agtttcactgactcttactctgtcagtgcttcaagtaaaccaccgactgctgaccagtct
gcagagtttgatccgaaaccatcagctccaccacttgcatactcagaaggtgatggctct
gtgcatcttccatctgcacctcctgcatcaaagatggagcttcctggatcaggaccagca
cctgggactcgtgatatagatcaatcagcttttgactatacagcaaacagaaacatggag
cgtgatgctttgaaaaggcaagatacgcccatgcccatcaggaaggatatcttaggaaag
gatgagctaagagatggtcacagtgatgttgcaatgcttccaaatccccgtttgatgttt
caggttggagggaatgctacacacttggttactccatctgaaattatatcgggcactctc
tcttctgctgaaaacaatgatgtctctaaatctgatggaggaaaaattcaagatgtttct
agtagaagctctcggattgcagaattggaaccaaaacatattgatgagagtaaaccagat
caaaattcaggacttgaagcagtcaaggaagctcagattgtttgtgagcatatggagaaa
actcgttccttggagcaaactgttgaaatgatcagtgagcgctcagtgacaactgacaag
tacagcgtggaagaatcacaagcaccatctgataaaccgacgttggaccatactggcgtt
gctgatgaaaatgtccggaaaaactctctggaaatgcctgagaaaagtgattactctgct
tccagggagcaatcgtcgtcgtatacgaaggaggagaaagttttacaccctcaaacatct
ggtcaaccatctccttctgtgagtgctttcaactcaactgagtcacatgagcctttgagc
tcggcataccctccaatcagctccttccctgaagttgctgccacacaagggatgctgcaa
cagctcataggtatgcagaaggacatggaaaagaagttggatactatgattcctgtatct
gtggcaaaggaaagcaaaaaacttgagacatcattagggcgcaccatggagaaatctatc
aaggctcactttgatgccttttgggttcgtctccaggaagaaaacactaagcgtgaaaag
gctgacagagagcgaatgcagcagttggttactctcattacgagctcaataaataaggat
gttccttctaatctggagaagtcacttaagaaagaaatctcttcacttgggcctgttgtt
gctcgagcaattacacctatcattgagaagtgcatagcctctgctgtttctgattcagtt
cagaaaggggtgggtgacaaggtgtgcaatcagctggacaagtctattagtggaaaactt
gaagctacacttgccaggcaaatccaaatgcagttccacacatctgtaaaacaggctctt
caggatgctttacgcactagctttgaatcattgcttgttccagcatttgaacaatcatgc
aagacaatgtttgagcaagtagatggtacatttcagaaaggaatgtctgagcacacagtt
gctattcaacagcaacttgaggcagcacatactccattagcgttaactttaaaggaaacc
atcaattctgcatcatcaatcacccagagtttttcatcagagttacttgatggccaacgg
aagctattggcacttgttgcttctgggaatgccaaggcacatactcccaatgctttgcaa
cccattaatggtcctatgggcggccctcaggaggtgaaggttgaggctccgttagatccg
atgaaagagctgggcagactggtatctgaacgcaagtttgacgaggcatttacaatggcc
cttcaaaggagtgatgtttccatagtatcgtggctgtgctctcaggttgatttgcgtgca
ttattggcaatggtcccagtccctcttaaccagggggtcctcttggccctattgcagcag
ctagcagttgacataaacaatgagacatcacgaaaggttcaatggatgacagatgttgcc
atggcaatcaacccagcggacccgatgattgccgtgcatgtgcgacccatctttgatcaa
gtctacagccaattggcccaccagcggtcactccccactatgagctcatcagatggcacc
agcatccgtatgctcatgcatgtaattaactcggttctgctcagctacaagtga
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