Setaria italica (foxtail millet): 101768439
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Entry
101768439 CDS
T02818
Name
(RefSeq) exosome complex component CSL4
KO
K07573
exosome complex component CSL4
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101768439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101768439
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
101768439
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
101768439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
CHASE5
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
101768439
NCBI-ProteinID:
XP_004954356
UniProt:
K3YVT9
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All DBs
Position
I:complement(41245086..41248197)
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AA seq
200 aa
AA seq
DB search
MAATAMDQDGGGGDVVTPGELLGNSLTLVAGRGAYADGRSVRASVTGHRRIVPPAPGSDD
QRSTVEVVGHKAHGAVPQPGSVVIARVTKVMPRMANADIMCVDSKAIKEKFTGLIRQQDV
RATEIDKVDMYQSYRPGDIVRAVVLSLGDARAYYLSTAKNELGVVSAQSIAGGTLVPVSW
TEMQCDLTGQIEQRKVAKVE
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaccgcgatggaccaggacggcggcggcggcgacgtggtcacgccgggggag
ctcctcggtaactcgttaaccctcgtggctgggcgcggagcctacgcggatggtcgctcc
gtgcgcgcgtcggtcacaggccaccgccgcatcgtgccgcccgcacctggctccgacgac
cagaggtctacggtggaggtggtggggcacaaggcccatggagccgtgccgcagcctgga
agcgtcgtcatcgcccgagtaacaaaggttatgcctagaatggccaatgctgatatcatg
tgtgttgactcaaaggcaatcaaagaaaagttcactggcctgataaggcagcaagatgtt
cgtgcgactgaaatcgacaaggtggatatgtaccagtcatatcggcctggggacattgtt
agagctgtggttctttctctcggtgatgcaagggcctattatctttccactgcgaagaat
gaacttggcgttgtttcagcacaaagtatagcgggtggcacattggtcccagtcagttgg
actgagatgcaatgtgacttgactggccaaattgaacaaaggaaagttgcaaaggtggaa
tag
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