Setaria italica (foxtail millet): 101768463
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Entry
101768463 CDS
T02818
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03013
Nucleocytoplasmic transport
sita03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101768463
03015 mRNA surveillance pathway
101768463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101768463
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101768463
mRNA cycle factors
P-body specific factors
101768463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
101768463
NCBI-ProteinID:
XP_004976274
UniProt:
K3Y4R8
LinkDB
All DBs
Position
VII:complement(25307914..25317633)
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AA seq
1185 aa
AA seq
DB search
MENTEEESCTGSKQDEEEHRSNQEDEKARLEEYKRLIDLKAALRQSNLNPERPDANHIRT
LDSSIKRNTTIIKKLKVINDEVKDGLMEELKTVNLSKFVGEAVSYICTAKLRSTDIQAAV
QICSLLHQRYMDFSPCLIQGLLKTFYPEMSGEPDLDKNARAMKKRSTLKLLMELYFVGIF
EDVSTFTTIIKGLTSLEHLKDRETTQTNLSLLASFARQGKSFLGLQQHEQDAYDEFFTGL
NITFDQKIFFKKAFCSYYDAASELLLSEHASLRVMELENAKILNAKGELSDENTASYENL
RRSFDQLLHCVSSLAEALGMQPPVMPEDGHTTRITTGTDLTTSEKESSVVQHIWDDEDTK
AFYESLPDLRAFVPAVLLGQAEPTLAEQHGKVHQQSNECTMQSETEVQDTEHQSGGKTNV
EHKNRVNTEKERVDKETSEEMIVGRKGDTEREKVRGVDGASLDSLLQKLPRCGSRDLVDQ
LAVEFCYLNSKANRKKLVRALFSVPRTSLELLPYYSRLVATLSPFMKNLPSMLLSMLEEE
FNFLINKKDQIKIETKIRNIRFIGELCKFKIAPSCLVFGCLKACLDDFTHHNIDVACNLL
ETCGRFLYRLPETTIRMSNMLEILKRLKNVKNLDAHHSTLVENAYYLCKPPERSSRVSKL
RPHLHQYIRRLLFSDLDKSTVQHVLLQLLKLSWADCEQYLVKCFLKVHKGKYSHVHLIAL
LTASLSHYHHDFAVTVVDEVLEEIRVGLELNDYAMQQQRLAHMRFLGELYNYEYIDSSVI
FETLNLLTIFGHGTPEQDLLDPPEDCFRIRLIVTLLQTCGHHFSRGSSKRRLDRFLLLFQ
RYALRKGPLPLDVEFDVQDMFAELRPKMTRHSSIEGLNDALVELEENERVMAVEKGGDKR
HLDSESQLKQSENAAFDTNGKRVANRPKKNVKSHEDIGDSESSSDSRSRYRSGHEDGESF
PYEETLDDRLENEDHSEDIDAPVGSDEEGTVEVRRKVVQVDAKEQEDFDRELKAILQESL
ESRKLELARPTVNMTIPMNAFEGSKDLMAIEAADKENVCGDGEIGKPGDLGDVRVKVLVK
RGHKQQTKQMLIPGDCPLVQSTKQQSAAELEEMQNIKRKILEYNEREEELDAGSLQGGDW
DQGGSGNMPLAGWPGRVSWVGPNRVGGVRRHYWVAGGFYRGYGRR
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atggagaatacagaagaggagagctgcacgggaagcaagcaagatgaagaggagcatcgc
agtaatcaagaggatgagaaggcccgtcttgaagaatacaaaaggcttattgatttaaag
gctgctcttcgccagagtaacctaaaccctgaaaggcctgatgcaaatcacataaggact
cttgattccagtattaaacgcaatacaacaatcatcaagaaactcaaagtgataaatgat
gaagtaaaggacgggttaatggaagaactgaaaactgtaaacttgagcaaatttgtcggt
gaagcagtttcttacatttgtactgccaagctccgttctactgacatacaagctgcagtt
cagatttgctcgctactccatcaaagatacatggacttctctccttgccttattcaagga
ctcttgaagaccttctatcctgagatgtctggagaaccagatttagacaagaatgcaaga
gccatgaagaagagaagcactcttaaacttctaatggaactgtattttgttggaattttt
gaagatgttagtactttcacaaccattataaagggtcttacatcactggagcatttgaag
gatcgggaaacaacgcagacaaatttgtctctccttgctagttttgctcgtcaaggaaaa
tcttttcttggactgcaacaacatgagcaagatgcttatgatgagttctttaccggcctc
aatattacttttgatcagaagatattctttaagaaagccttttgctcttactatgatgca
gcaagcgaacttctcttgtcagaacatgcgtctcttcgtgtgatggaattggaaaatgca
aaaattttgaatgccaaaggagaactcagcgatgagaatactgcctcatatgagaatctg
cgaagatcttttgatcagttattgcactgtgtttcctccttagctgaagctcttggtatg
cagcctcctgttatgccggaagatggacatacaacaaggattaccacaggcactgactta
accacttctgagaaagaatcctctgtggtacaacatatatgggatgatgaggacaccaag
gctttctatgaatctttacctgatctcagagcatttgtgcctgctgtactactgggacaa
gctgaaccaacattggcagagcagcatggaaaggttcaccagcaatctaatgagtgtacc
atgcagtcagagactgaagtacaagatactgaacatcaatccggtggaaaaacaaatgtg
gagcacaagaatagagtgaacactgaaaaagaaagagtggataaagaaacatctgaagaa
atgattgttggcaggaaaggagatactgaaagagagaaagtacgaggcgtagatggtgca
agcttggatagcctgctgcagaagttgccaagatgtggtagccgtgatctagttgatcaa
ttggcagtagagttttgctacctgaattctaaagcaaacaggaagaaacttgtgcgggcc
ttattcagtgttccaaggacttctttggaactgctaccttactattcccgattagttgcc
accttgtcgccatttatgaagaatcttccgagtatgctattgtcaatgcttgaagaggag
tttaattttttgataaataagaaggatcagatcaaaattgaaactaaaattagaaacatt
cgatttattggggagttgtgcaaattcaaaattgcgccttcatgccttgtttttggctgt
ttgaaggcttgcttagatgatttcacacatcataacattgatgtggcctgcaatcttctt
gagacctgtggacgctttctttatcgcttgccagaaactacaattcgcatgtcaaacatg
ttggagatactgaagagattgaaaaatgtcaagaatttggatgcacaccatagcacactt
gtagaaaatgcctattacctatgtaaacctccagaaagatcttccagagtctctaaactt
cggccacatctacatcaatacataaggaggttacttttctccgatcttgacaaatctact
gttcaacatgttcttcttcaattgctcaagttgtcttgggcagactgtgaacagtacctt
gtgaagtgttttctaaaggttcacaagggaaagtatagccatgttcacctgattgcttta
ctcactgctagtcttagtcactatcatcatgactttgctgtgacagtggtagatgaggtt
ctagaggagattagagttggacttgagctaaacgactatgcaatgcagcagcaacgcctt
gcccatatgcggtttcttggggagctatataactatgagtatattgattcatcagttata
tttgagacactaaaccttcttactatatttggtcatggaacacctgagcaagatctgctg
gatcccccggaagattgtttcaggatcaggctgatcgttacacttctacagacttgtggt
caccatttttctagaggctcttcaaaaagaaggctcgacagatttttgctactttttcaa
agatatgctctcagaaaagggccgttaccacttgatgtagaatttgatgttcaggatatg
tttgctgagttacgacccaaaatgacgaggcattcatccatagaaggattaaatgatgcg
cttgttgagcttgaagaaaatgagcgtgtgatggcagttgagaaaggtggagacaaaagg
cacttggacagtgaatcgcagttgaaacaatctgaaaatgctgcttttgatacaaatggc
aagagggtagcaaatagacctaagaaaaatgttaagagccatgaagacataggagatagt
gagagctcttcagatagcagaagcagataccggagtggacatgaagacggggaaagtttt
ccgtacgaggaaacattagatgacaggttggaaaatgaagaccacagtgaggacattgat
gcacctgttggttcagatgaagaaggaactgttgaggttcgacggaaggtggtgcaagtt
gatgctaaggaacaagaagactttgacagagaactgaaagccattcttcaggaaagcttg
gagtcacgtaagttggagctggctaggcccactgtgaacatgacgataccaatgaatgcc
tttgaggggtcaaaggacttgatggccattgaagcagcggacaaagaaaatgtgtgtggt
gacggtgagattggcaaacctggtgatctcggcgacgtgcgcgtcaaggtgcttgtgaag
agagggcataagcagcagacgaagcaaatgctcatccccggggactgcccactcgtgcag
agcacgaagcagcagagtgctgctgagctcgaggagatgcagaacatcaagcggaaaatt
cttgagtacaacgaaagggaggaagagctggacgcagggtcgctgcaaggcggggactgg
gaccaaggaggaagcggcaacatgcctcttgctggatggccggggcgtgttagctgggtt
ggtccaaacagagttggaggcgttcggcggcactactgggttgctggtgggttctaccgt
ggctatggaagaaggtga
DBGET
integrated database retrieval system
