Setaria italica (foxtail millet): 101768592 Help Entry 101768592         CDS       T02818                                  Name (RefSeq) sericin 1   KO K10643   CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] Organism sita  Setaria italica (foxtail millet) Pathway sita03018   RNA degradation Brite KEGG Orthology (KO) [BR:sita00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     101768592  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:sita03000]     101768592    03019 Messenger RNA biogenesis [BR:sita03019]     101768592    04121 Ubiquitin system [BR:sita04121]     101768592 Enzymes [BR:sita01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      101768592 Transcription factors [BR:sita03000]  Eukaryotic type   Zinc finger    Cys3His zinc factors     101768592 Messenger RNA biogenesis [BR:sita03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      101768592   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      101768592 Ubiquitin system [BR:sita04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     101768592 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  zf-RING_4 RRM_1 Baculo_IE-1 Rtf2 PcfJ Nup35_RRM_2 Motif Other DBs NCBI-GeneID:  101768592 NCBI-ProteinID:  XP_004973930 UniProt:  K3YFX1 LinkDB All DBs Position VI:33379852..33388303 Genome browser AA seq 1170 aa AA seqDB search MDAHAQHQRRTAMSDDGDHTCPLCAEEMDITDQQLKPCKCGYDICVWCWHHIIDMAEKEE TEGRCPACRTPYDKDRIVKMAANCERTVTEKNAEKKHKTQKVKPKAVAAAAAAATSSTVE AKKHLASVRVIQRNLVYIIGLPAHLCNESVLERREYFGQYGKVLKVSVSRPTGPPSQQAS ANNNISVYITYAKEEEAVRCIQSVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLY LHDVGSQEDSFTKDEIISAYTRTRVPQMASSVSQRRAGTILPPPADDFSYSAVVSAKHTV KNGTPNTTNQPRVSPPNSSSGRSTLPPAASWGHRDSNARTTATGVTSLQSQKSKSEPQSN SFSSSSTTSSTRIPSAWNDDTSTAPTMSEGWQVPEQDGTSKTVQPYKPGIAKETQAVSSL ESSVDIDFSTIPSAWNDDDIVVSDGMSKGSDEIQAGNENGKLTHLASKSPISPKKDTTVN ITSKSPSDSVSSIEISKSDVKTGDGDCSINNIAPESPTSNDVNCQSTCHAAGEKILEDTV HRDAGIDSLSVQISSVTLDGKDEVHSMVGNHQPDAVPCTSVAVPMGQNFDKDQSHLKLDG FLPSENKDTLSCQYSSDNHLDWSSELQSSSATALSDIVNSLMITEKLNSRLMDGSDQPSY SSFARIPNTFDTSLWNDTETNPALTIGTRTSSQMQTGFSSINNTCSLLSGGQDGLGAAYT LGNVSGHPGMGSHQPGAMRSVRTDSVGSFGKTLSVNKDESRIISDMLSSEFNPWDDSYST ANNFVRMLRESENNDASFAMSSWRSGSGSKESRFSFARQDNQGNILESSLRNTGSEQNFS LLPQISQGNAYRNGPAFQSLENDFSSSNSLAVSDMATTGTSWSKISAPPGFSAPARVPPP GFSSGFLPSQDGMNPPPGFSSGISSHDGSLPPPRFPSGISSQEVSRPPPRLPSPFSSGFS SLDRPKSPSRFPTAFSSGFSSLDGSNQVYGSKYPETLLRDNVLGAISNHYQAPFGRHASD VEFNDPAILAVGKGRMPGMGDLGLDTPAFPAQLQTSNNDLRFQLGVQPNVQSHQNLRFTD HMQDAFNPMNDNHLASRFLAQNHGPISPYEQRPQQPGNSQLINGHWDGWSDLRQGSNTPM PDMSRMLYPSEVNSLHRLGSNDIYNRAFGM NT seq 3513 nt NT seq  +upstreamnt  +downstreamnt atggatgcccatgcgcagcatcaacgcaggactgccatgagcgacgatggagaccacacc tgcccgctctgtgctgaggagatggacatcactgaccagcagctcaaaccatgcaaatgc ggctatgatatttgcgtctggtgctggcaccacatcatagacatggctgagaaagaggag actgagggccgctgccctgcatgccgcactccttacgacaaggacaggatagtcaagatg gctgccaattgtgagaggaccgtaacagagaaaaatgcagagaagaagcacaagacccag aaggttaagccaaaggccgtggcagcagcagcagcagcagcaacatcatctaccgtagag gctaagaagcatctggctagtgtcagggttatccagagaaatctggtgtacataattggg ctacctgcacatttatgcaatgagagtgtacttgagcgtagagaatactttggtcaatat gggaaagttttgaaggtttcagtttcccgtccaactgggcctccttcccagcaggcatca gcaaacaacaatattagtgtgtatattacttatgctaaagaagaagaggccgtcaggtgt attcaatctgtacacaattttgtcttggaaggaaaagtgttaagagcatgctttggtact acgaagtactgccatgcatggctgcggaatatgacatgtgggaatccagattgcctctat ttgcatgacgtaggcagtcaggaggatagttttacgaaagatgagatcatctcagcatat acgaggactagggtcccccagatggcatctagcgtttcacaaagacgtgcaggcactata ttgcctcctccagctgatgatttctcttacagtgcggtggtttccgccaagcatacagtc aagaatggaacacctaataccaccaaccagcccagagtttcacctccaaacagtagttct gggaggtcaacgcttccaccagctgcatcatgggggcatcgtgattcgaatgccaggaca acagctactggggtgacatcattacagtctcagaaatcaaaatcagagccacaaagtaat tcattttcaagttcttcaacgacttcaagtacaagaataccctctgcatggaatgatgat acaagtacagcgccaacaatgtctgaaggatggcaggtgccagaacaagatggtacatca aaaaccgtacagccatataagcctggtattgcaaaggaaacacaggctgtatcatcattg gaatcatcagtggacatagacttctccacaataccttctgcttggaatgacgatgacatt gtagtgtcagatgggatgtcaaaaggaagcgatgaaattcaagctgggaatgaaaatgga aagctaacccatctagcttctaagtcaccaatatcacctaagaaagacacgacagtgaac attaccagcaaaagcccttcagattctgtatcaagtatagaaatatcgaaatcagatgtg aagactggtgatggtgactgctcaattaacaatattgctcctgaaagccctacttcaaat gatgtaaactgccaatctacttgtcatgctgccggcgagaaaatactggaggatactgta cacagggatgctggcattgacagtctatctgttcagatatcttcagtaacattagatggc aaagatgaggttcatagtatggtaggaaatcatcaaccggatgcagtgccatgcacgtct gttgcagtgcccatgggtcagaattttgacaaagaccaatctcatcttaagcttgatggg ttcctaccttcagaaaataaggatactctttcttgtcaatatagttcagataatcatctt gattggagttcggagctgcaaagtagtagtgcgactgctttaagtgatatagtaaattct ctaatgatcactgagaaacttaatagtaggttgatggatggttcggaccaaccatcatat tcctcatttgcccgtattcctaatacatttgatacttcgttgtggaatgatacagaaact aaccctgcattgaccattggcactagaacttcctcacagatgcagaccgggttttcttca atcaataacacttgttccttgttaagtggaggtcaagatgggctaggggctgcatataca cttggtaatgtttctggacatccaggaatgggaagtcatcagcctggagcaatgcgttca gtaagaactgatagtgtaggaagttttggcaagaccttaagtgtaaataaggatgagagc aggataatctctgatatgttgtcgtcagagtttaatccatgggatgattcatattcaact gctaacaattttgttaggatgcttagggaatctgaaaataatgatgcttcttttgcaatg tcttcatggagatcaggatctggcagcaaagagtcaagattttcgtttgctagacaagat aaccaaggaaacattttggaatcgtctctcagaaacactggtagtgagcagaatttcagt ttgctaccccagatttctcaaggaaatgcttaccggaatggccctgcattccagtcccta gagaatgatttttccagtagcaactctcttgctgtgtcagatatggcaactactggtaca tcatggtctaaaatatctgcacctccgggattttcagcaccagcaagagtcccccctcct ggattttcttctggatttcttccatcccaggatgggatgaatccacctcctggattttct tctggaatttcatctcatgatgggtctctgccccctcctagattcccttctggaatttca tctcaggaagtgtctaggcccccacctagattgccttctccattttcttctggattttca tctctggataggcccaagtccccttctagatttcctactgcattttcttctggattttca tcactggatgggtctaatcaggtgtacggctcaaaatacccagaaactcttctccgggat aatgttttgggtgccatcagtaatcattatcaagctccgtttggcagacacgcaagtgac gtagaatttaatgatcctgctatattggctgttggcaaagggcggatgcctggaatgggg gatttagggctggataccccggcatttccagcacagttgcaaacatcaaataatgatcta aggtttcagttaggtgtgcaaccgaatgtgcagtctcatcaaaacctgagattcacagac cacatgcaggatgcctttaaccctatgaatgataatcacctggcatccagatttttagcg cagaaccatggtcccatatccccttacgagcagcggccacagcaaccgggaaactcacag cttataaatggacattgggatgggtggagtgatttgagacaagggagtaacacccctatg ccagacatgtcgaggatgctatatccaagtgaagtgaacagcttgcacaggctgggttca aatgatatttacaacagagcctttggaatgtga

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