Setaria italica (foxtail millet): 101768678
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Entry
101768678 CDS
T02818
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 5-like
KO
K13126
polyadenylate-binding protein
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03015
mRNA surveillance pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101768678
09123 Folding, sorting and degradation
03018 RNA degradation
101768678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101768678
03041 Spliceosome [BR:
sita03041
]
101768678
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101768678
mRNA cycle factors
Stress granule specific factors
101768678
Spliceosome [BR:
sita03041
]
Complex C
Other components
Complex C specific factors
101768678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Nup35_RRM
Motif
Other DBs
NCBI-GeneID:
101768678
NCBI-ProteinID:
XP_022681880
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All DBs
Position
IV:35064628..35067372
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AA seq
475 aa
AA seq
DB search
MATPPPATIAAEAVPAAEGAPAATPASIASLYVGDLADSVEEPVLIEVFSQDAPVATVRV
CRDSVSGASLGYGYVNFHSRHDVVRALEALNFAPLNGKNIRLMFSNRDPSMRKSGRANVF
VKNLEPSIDSKSLHDMFSSFGTILSCKVATDPSTGQSKGYGFVQYESEESTQDAINKLNG
MLVDGRKIFVGLHMRRQNREVKFTNLYIKNLPAEFTDDDLRQEFAPVGEITSVVIMRHSD
GASKCFGFVNFXKSEYVTEALQKLNDKSIDDKVLYVGRAQKKAERQAELRAKFQQERDSE
VEKPQGTNLYLKNLDDSINDEKLKKLFEEFGEITSCKVMVDSRGRSKGSGFVSFTTAEAG
HNAINGMNSKIVGKKPLYIGLHQPKDQRKAMLTAHFAQRSLAMAAVSYATLQPVYFGHPA
PGQIPLQATVFGFPQHLVPRMGPITQVIMPQNTQSSMRHGQRMGARHGATSPHIG
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgccgcctccggctacgatcgcggcagaagcggtccccgcggccgagggggca
ccggcggcaacacctgcatcaatcgcgtctttgtacgtcggcgatctagctgatagtgtc
gaggagccggtgctcatcgaggtcttcagccaggatgcgcccgtggcgaccgtgcgtgtc
tgccgggacagcgttagcggcgcctcgctcggctacggctacgtcaatttccactcgcgt
catgacgttgttcgtgcacttgaagctttgaattttgctcctttgaatggaaaaaacatt
aggcttatgttctccaatagggatccaagtatgcggaagagtggacgtgctaatgtgttt
gttaagaatcttgaacctagcattgacagcaagagtttgcatgacatgttttcatctttt
ggcactatactatcatgcaaagttgccactgatccatccactggccagtcgaaaggatac
ggttttgtgcagtatgagagtgaggagtccactcaagatgcaattaataagcttaatggc
atgctagtagatgggagaaaaatctttgtgggcctacacatgcgccgtcagaacagagaa
gtcaagttcacaaatctatatataaagaacttgcctgctgaattcaccgatgatgatctg
cggcaagagtttgcaccagttggtgaaattactagtgttgtgatcatgagacattctgat
ggtgcctccaaatgttttggttttgtaaatttttagaaatcagaatatgttaccgaagca
ctccaaaagttgaatgacaagtctatagatgataaggtcttgtatgttggaagggctcag
aaaaaagcagaaagacaagctgagttgagagcaaaatttcagcaagaaagagacagtgag
gttgagaaacctcaagggactaatttgtacttgaagaatcttgatgatagtatcaatgat
gagaagctcaagaagttgttcgaagaatttggtgagataacatcatgcaaggttatggtt
gattctagaggaaggagcaagggttcaggttttgtgtcgtttaccactgctgaagctggc
cataatgcgattaatggaatgaacagtaagatagttggaaagaaaccactctatattggt
ttacatcaacctaaagaccaaagaaaagcgatgctaactgcacattttgctcaacgtagc
ctagcaatggcagctgtttcgtacgctacactccagccggtttattttggccacccagct
cctggtcaaataccactgcaagctactgtctttggatttccacaacacttggtccctaga
atggggcctatcactcaagtcataatgccacagaatacgcagagttcaatgcgtcatggc
caaaggatgggtgctcgtcatggagcaacgtcaccacacataggatga
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