Setaria italica (foxtail millet): 101769185
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Entry
101769185 CDS
T02818
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101769185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101769185
03012 Translation factors [BR:
sita03012
]
101769185
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101769185
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101769185
Translation factors [BR:
sita03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101769185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
dsrm
AAA_22
nSTAND3
AAA_19
T2SSE
ABC_tran
NACHT
ATPase
AAA_16
AAA_23
Dicer_dimer
ATPase_2
Myosin_head
Motif
Other DBs
NCBI-GeneID:
101769185
NCBI-ProteinID:
XP_004981781
UniProt:
A0A368SEM8
LinkDB
All DBs
Position
IX:5550890..5557770
Genome browser
AA seq
1156 aa
AA seq
DB search
MRRGLRRGLGILLVPLPNAPSRPPPISLAALLLHPHRLNNGFSRRSFCSFPGGGRAVEQF
SDDEYDHEYEDLRPSSSVANIDEWRWKLSMLQRNAEEQEIISRDRRDRRDYDQIANLAKR
MGLYSQTYGRVIVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLSL
DKSGGNTESGSEAAGKADNVNLDEQHDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGV
KMLEFRKSLPAYKDKERLLAAIARNQVIVISGETGCGKTTQLPQFVLEAEIESGRGAFCN
IICTQPRRISAMAVAERVSTERGENLGESVGYKVRLEGMKGKDTHLLFCTSGILLRRLLS
DRNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLSRRRDLRLILMSATLNAELFSSYFGGA
PTIHIPGFTHPVRAHFLEDILERSGYKLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITT
LVEDALKNSSFETYGSRTRDSLANWNPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDD
ISCLKDQLKAHPLLGDPNRVLLLACHGSMATAEQRLIFEKAPPNVRKVVLATNMAEASIT
INDIVFVVDCGKAKETTYDALNNTPCLLPSWISRASARQRRGRAGRVQPGECYHLYPRCV
YDAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVEFLKMIGA
LDGNENLTDLGRYLSMLPVDPKLGKMLIMGSVFRCIDPILTVVAGLSVRDPFLLPQDKKD
LAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQF
SYILKDSGLIDSDANINNSLSHNQSLVRGIICSGLFPGIASVVHRENSMSFKTMDDGQVL
LYANSVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGAVAKGSMAGHLKM
LDGYIDFFMDPSLSECYLQLREELDKLIQKKLEDPNFDIHKEGKYILYAAQELTAGDLCE
GRFVFGRETSRAKLQSPEEEGKSSLIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEF
RAMVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTQTSGVKPQDEGDDSSPLDLTDSMLK
LLTRPRRHSKNNSRRR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgcgccgcggcctgcgccgcgggctgggcatcctcctcgtcccacttcccaacgcaccc
agccgcccgccgcctatctctctcgcggctctcctcctccacccccaccgcctcaataat
ggcttctcccgccgctccttctgcagcttccccggcgggggccgcgccgtcgagcagttc
tccgatgacgagtacgaccacgagtacgaggacctccggccgtcgtcgtcggtggcgaac
atagacgagtggagatggaagctgagcatgctgcagcgcaacgccgaggagcaggagatc
atctccagggaccggagggaccgccgggactatgaccagatcgccaacctcgccaagaga
atggggctctacagtcagacgtacgggagggttatcgtcgcgagcaaggtcccactgcca
aactacaggccggacctagatgacaagcggccgcaaagagaggtggtgatcccgctgagc
ttgcagaggagagttgaaggtcttgtgcaggagcatctagaccgtgcactcttgtcactg
gataaaagcggtggcaacacggaaagtggttctgaggcggctgggaaagctgacaatgtg
aacctggacgagcagcatgattctctgcttgataggtcagtcatggagaagatacttcag
aggaagagcattcgaatgcgcaattttcagagaagttggcaggaatcacctgaaggtgtt
aagatgttagagtttcggaaatcgcttccagcatacaaggacaaagaaaggctcctagca
gccattgcacgcaatcaggttatagtaatttctggggagacaggatgtgggaaaacaaca
cagctgcctcaatttgtattggaggcggaaatagagtctggccgaggggccttttgtaac
ataatttgtacacagccacgaaggatatctgcaatggcagttgcagaaagagtatccact
gagagaggagagaaccttggtgaatcggttggctataaagttcgactggagggaatgaag
ggaaaagacacacatttgcttttctgcaccagcggcattttactaagacgattgctgagt
gaccgaaacttgaatggcgtgactcatgtatttgttgatgaaatacatgaaaggggcatg
aatgaagatttcctgttgattgtactgaaagatctattatcacggcgccgtgatttgagg
ttgatattgatgagtgctactctaaatgcggaactgttctctagttattttggaggggca
ccaactatccacattcctggattcacgcatccagtgagggcacattttctggaagatata
ttggagaggtcgggctacaagttgacttcaagcaatcaacttgatgattatggccaagat
aaagtctggaaaactcagaggcagctgctgcctagaaaaaggaaaaatcaaatcactaca
cttgtcgaggatgccctaaaaaattcaagctttgagacatatggttccaggacgcgagat
tctctagcaaattggaatcctgattgcattgggttcaacctcatagaggcggttctgtgc
cacatatgtcgcaaagagcgacctggtgctgttttagttttcatgactggatgggatgat
attagttgcttgaaggatcaactgaaagcacatccgttgttaggtgatccaaacagggtt
ttgctgcttgcatgccatggttctatggctactgctgagcagaggctaatttttgagaag
gcacctcctaatgttcggaaggtagtcctagccacaaacatggcagaagcaagtattaca
ataaatgatatcgtttttgttgtggattgtggtaaagcaaaggaaactacatatgatgct
ctgaacaataccccctgcttactcccctcatggatttcaagagcttctgcccggcagagg
aggggcagagctggccgtgtgcaacctggagaatgctatcatctttatcctagatgtgtg
tacgatgcattcgcagaatatcagcttccggagcttcttagaactcctttgaattcatta
tgtttgcagataaaaagtttgcaagttggcagcatcggagagttcctatcagctgcttta
cagcctcctgaaccactagctgtccaaaatgcagtggaattcctgaagatgattggcgca
ttagatggaaatgagaaccttactgatcttggacgttacctttccatgcttccagttgat
ccgaaactgggaaagatgcttataatgggctcagtttttcgctgcatagatcctatactt
actgtagtcgctggactgagtgttcgggatcctttcctgttgccacaggacaagaaggat
ttggcaggaactgcgaaatcaagattctcagcaaaggattatagtgaccatatggccctt
gttcgggcttatgaaggatggaaggatgcagagagagaagggtctgcttatgaatactgt
tggagaaatttcctttctgctcaaacactacaagctattcactcacttcggaagcaattc
agctatattttaaaggattctggtttgatagactctgatgcaaatataaataacagtttg
agccataatcaatcattggtccgtggcatcatatgttctgggctttttcctgggatagca
tctgttgtgcatcgagaaaactcaatgtcctttaagaccatggatgatggccaagttctt
ctttatgctaattcagtgaatgcaaagtaccagaccatcccatatccatggttggtcttt
ggtgagaaggtgaaggtgaatgctgtcttcatccgtgattcaaccggagtatcagactcc
atactgatcttatttggtggtgctgttgcaaaaggaagcatggctgggcacttgaagatg
ctcgatgggtacattgatttctttatggatcccagcctttccgaatgctacttgcaactt
agagaagaacttgataaacttatacagaagaagcttgaagacccgaactttgacatccac
aaggaaggcaagtacatcctatacgccgcgcaggagctcaccgccggcgacctatgcgag
gggcggttcgtgttcgggcgcgagacgagccgggccaagctccagagccccgaggaggag
ggcaagagcagcctgatcaaggatgggatgaaccccaagagcctgctgcagacgctgctg
atgcgcgcggggcacaccccgcccaagtacaagacgaagcacctcaagacgaacgagttc
cgggccatggtggagttcaaggggatgcagttcgtggggaagccgaagcggaacaagcag
ctggcggagcgggacgcggccatcgaggcgctcgcgtggctgacgcagacctccggcgtg
aagccgcaggacgagggcgacgactcctcgccgctggacctgacggacagcatgctgaag
ctgctcacgaggccgaggcggcactcgaagaacaactccaggagacggtga
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