Setaria italica (foxtail millet): 101769460
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Entry
101769460 CDS
T02818
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein D-like
KO
K14411
RNA-binding protein Musashi
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101769460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101769460
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101769460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
Nup35_RRM_2
RRM_PARP14_3
NTP_transferase
RRM_3
PHM7_cyt
RRM_PARP14_1
Motif
Other DBs
NCBI-GeneID:
101769460
NCBI-ProteinID:
XP_004981613
UniProt:
A0A368SE16
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All DBs
Position
IX:complement(4436763..4440224)
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AA seq
306 aa
AA seq
DB search
MEQTDLEPRKLFVGGLPRWGVTPERMRSHFARYGHVVDALVMLCPDGMGRGFGFVEFQDE
VAALRALDVRERDKHDAFFGRRVDVKKAEKKQGIRYVPTQSTTYNHQNADSKKIFVGGLG
DKITKDDLSSYFEKFGTITDAVVFYDKLTRKARGFGFVTFDSQEAADKVLEKSFHELKGI
KVETKNAEPRGSMVRGAWSHRSPANSYDGMYSPYNIPFVTGPYFVPYPYYSPSGIINYGY
MMNQIGTSNDTGMMAMLPFPARSAHHGRSYGSEVATLKLETGQQRIDISTSTSMKSDPLK
PDSNLL
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaacggacctcgagcctcggaagctcttcgtcggggggctcccgcggtggggg
gtcaccccggagcgcatgaggtcccacttcgcccggtacgggcacgtggtggacgcgctg
gtgatgctgtgtccggacggcatgggccgcggcttcggcttcgtcgagttccaggacgag
gtggcggcgctcagggcgctggacgtgagggagagggacaagcacgatgccttctttggc
cgcagggttgatgtgaagaaagcagagaaaaaacaaggaattagatatgtgccgactcaa
agcactacctacaatcaccagaatgctgattcaaagaagatctttgtgggtgggttagga
gacaagattaccaaagatgacctctcaagttactttgagaagtttgggacaataactgat
gcggtcgtgttttatgataaactaacaagaaaggcgaggggcttcggatttgtgacattt
gattcccaggaagctgcggacaaggttttggagaagagttttcatgagttgaagggaata
aaggtggaaaccaagaatgccgaaccaagaggttcaatggtcaggggggcttggagtcat
aggagccctgctaacagctatgacggaatgtactcaccatacaacataccatttgtcact
ggcccttattttgttccatatccatattactcaccatctggaatcataaattatgggtac
atgatgaaccaaataggcacctcaaatgatactggcatgatggcaatgctgccctttcct
gcaaggtctgcacatcatggaaggtcatatggatctgaggtggccactctgaaactggaa
actggtcagcaaagaattgacatctctacttccactagcatgaaatcagatcccttgaag
ccagattccaacttactttaa
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