Setaria italica (foxtail millet): 101770641
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Entry
101770641 CDS
T02818
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101770641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sita03041
]
101770641
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101770641
Spliceosome [BR:
sita03041
]
Complex C
Other components
Step II factors
101770641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
AAA_22
HA2_C
DEAD
AAA_19
AAA_30
AAA_16
ATPase_2
ABC_tran
SLFN-g3_helicase
nSTAND3
Helicase_RecD
Flavi_DEAD
AAA_29
T2SSE
NACHT
FtsK_SpoIIIE
Dynamin_N
AAA_33
PhoH
Motif
Other DBs
NCBI-GeneID:
101770641
NCBI-ProteinID:
XP_004979200
UniProt:
K3ZHI8
LinkDB
All DBs
Position
VIII:16763876..16778235
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AA seq
701 aa
AA seq
DB search
MPSPSPPVLPISEHEDEIVAAVDTNPVVVVIGETGSGKSTQLSQILHRRGYTRRGAIAVT
QPRRVAAVSVSRRVAQELGVPLGDEVGYAIRFEDRTSERTCIKYLTDGVLLRESLSNPDL
KQYSVIILDEAHERSLNTDILLGLMKRLVKDRASDLKVLITSATLDGLKVSKFFSGCPVL
NIPGTLFPVEKFYSTERPTNYIESSLRTAIDIHAKEPPGDVLIFMTGKDDIDKMVSKLEE
RIQNLEEGSCMDALVLPLHGSLPPELQVRVFAPAPPNCRRFIVATNVAETSLTVDGVVFV
IDCGYVKQRQYNPSSGMYSLDVVQISRVQADQRAGRAGRTRPGKCYRLYPMSIYQKEFLE
ATVPEIQRSSLAGSVLYLKSLNLPDINILKFDFLDPPSRESLEDALRQLYLIDAIDENGQ
ITDVGRIMAELPLEPSLSRTLIEANELGCLSQALTVAAILSAEITLRSTRSKDMEGKRKR
QELPDGSGWGDHIQLLQIFESWDQTGYDPRWCSDHDLQVRGMKLSKDVRNQLCQIIQKIA
KGPTDVHARKSRKSDPDYRKLRRALCVGYGNQLAERMLHHNGYHTVGYRTQLVQVHPSSV
LEGDEYGKFPMYVVYHELISTTRPYMRNICAVDQAWVEPILKKLEKLDINRLSGGSALKD
SEPLEDKQVNMPKKAVDVKQSEVDSKIQAARERYLARKGKK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgccgtcaccgccggtgctgccgatctcggagcacgaggacgagattgtcgcc
gcggtggacacgaacccggtggtggtggttatcggcgagaccggctctggcaagagcacc
cagctctcccagatcctccaccgccgcggatacacccgccggggcgccatcgccgtcacc
caaccccgccgcgtcgccgccgtctccgtctccagaagagtagctcaggagcttggtgtc
ccactcggggatgaagtgggttatgcaattcgatttgaggacagaacttcagagagaaca
tgcataaaatacctcacggatggcgttcttcttcgtgaaagcctttcaaatcctgatttg
aagcaatactcagtaatcatactggacgaagctcatgagcgtagtctaaacactgatatc
cttttaggtttgatgaaaagattggtcaaggaccgagcttcagatttaaaagttctgatc
acctctgcgactcttgatggtttgaaagtttcaaagttcttctcaggatgccctgtgtta
aacattcctggaactttattccctgtggagaaattttacagcactgagcgcccaacaaat
tatatagaatcttcactcaggacagctatagatatccatgccaaggaaccccctggggat
gtcttaatatttatgacaggaaaggatgatattgacaagatggtctcaaaattggaggag
agaattcaaaatcttgaggaaggctcctgtatggatgctcttgtccttcctcttcatggt
tctttgccacctgaactgcaggttagggtatttgctccagcacctccgaactgtcgacgc
ttcattgttgcaacaaatgttgctgaaacttctctgactgtagatggagtcgtgtttgtg
attgattgtggctatgtaaagcaacgtcaatataatccatcaagtggaatgtattctctt
gatgtagttcagatcagcagagtgcaggctgatcagcgagcagggcgagctggaagaact
cgacccggcaagtgctataggctatacccaatgtctatatatcaaaaggagtttcttgag
gctacagttcctgaaattcaacgctcttctcttgctggaagtgttttatatctgaaatca
ttaaatcttccagacattaatatcctgaagtttgattttctagatccaccatcacgtgag
tcattagaagatgctttgaggcaattataccttattgatgcaattgatgaaaatggacaa
ataacagatgttggacgcattatggcagaactccccctggaaccttctctttcaaggact
ttgattgaagcgaatgaattgggatgtctgtctcaggcattaactgttgctgcgattttg
tcagcggaaataacattgcgatcaactagaagcaaggacatggagggaaagaggaaaagg
caagagcttccggatggttctggctggggtgaccatatacaattgcttcagatattcgaa
agctgggaccaaacaggatatgatccacgatggtgctctgatcatgatttgcaggtgcgg
ggtatgaaattgagcaaagatgtgaggaaccaactatgtcaaattattcaaaaaatcgca
aaaggtccaactgatgtgcatgcaaggaaaagccggaagagtgaccccgactatagaaag
ttaaggagagctctatgtgtaggatatggtaaccagctagctgagaggatgctgcatcac
aatgggtaccatactgttggctataggacccaacttgtacaggtgcacccatcttctgta
ctggaaggtgatgagtacgggaagtttcctatgtatgttgtttatcatgagctgataagt
acaactcgtccgtacatgagaaacatttgtgctgtcgatcaggcctgggtcgagcctata
ttgaagaagcttgagaaattagatataaacagattaagtggtgggagtgcactgaaagat
tctgaaccattggaggataagcaagtaaacatgccaaagaaagccgtggatgttaaacaa
tctgaggtggacagtaaaatccaggcagctcgtgagcgctaccttgcacggaaaggcaag
aaatga
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