Setaria italica (foxtail millet): 101770817
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Entry
101770817 CDS
T02818
Name
(RefSeq) SWI/SNF complex subunit SWI3D isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101770817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sita03021
]
101770817
03036 Chromosome and associated proteins [BR:
sita03036
]
101770817
Transcription machinery [BR:
sita03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101770817
Chromosome and associated proteins [BR:
sita03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101770817
PBAF complex
101770817
GBAF(ncBAF) complex
101770817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Motif
Other DBs
NCBI-GeneID:
101770817
NCBI-ProteinID:
XP_004981946
LinkDB
All DBs
Position
IX:complement(6936562..6942546)
Genome browser
AA seq
939 aa
AA seq
DB search
MEPKPSSAAHGDAPAAEAPRRRGGGGKRKSSGSSFTPSKRQAKERNAAFHVPPHLLHSGP
LTRAARQSPHKLSGTPPETGPASSAAAAGDGVSGGQGEVDAIRPEREETPAAEQPLVDEV
FEAVRSRGAGVHVVPTFAGWFSWKEIHLVEKQTLPSFFNGKSEKRTPEVYLAIRNSIMVK
FHANPQLQLESKDLAELSTGEADARQEVLEFLDHWGLINFHPFPPAGQEESKPEESQDNS
HDEDKASLIEQLFKFEPVQSYIMPLPKKEDVGAPPPLPSLFPDPVLLEDVVAAAEPSVEY
HCNSCSVDCSRKRYHCRTQADFDLCCDCYNEGKFDPGMAKTDFILMDSSEVSGASGTSWT
DEETLLLLEGLEIFGGKWAEIAEHVATKTKAQCMLHFLQMQIEDRFHDGEDINQNTPGST
EQATTEKGIAETSEKMEVEDKEEGRDTVDEKVSEKTDGNCEETKPEGASAVENKDTQNSG
GKDSAASPNTEEPKQSSDEHPIVKENSGDVDTSGEKLSNVALDILKSAFEAAGHSPEYQG
SFAAAGNPVMALAAFLAGLVEDDNATTSCRSSLKAISEVSPALQLASRHCFILEDPPNDL
KDIYVSVSNKSNKSTDGDQTKDEEMTQNSVDTEKKENNEKEDNSLSMEKHNNSSISHNDH
QESDDKSISRDDCPVVEPKTSNAKESGDSTAIVDKSATDNTKGLTCSVQDSVILDNVNEC
GLLASPVVVAGSNICASDPKQVKDKPSVEVEARDDSSSKGKDELNKTEDAVASPANVQEQ
KQSETLENGKMGEPNSIESVVANEEKGSGVTANQNDSITRLRRAAATAISAAAVKAKFLG
DQEEYHIRRLTAMMIEKLFQKIEVKMSLFAEIEQVVLRTREYTEKTRKKLLLERNAIIAA
RMGALPSRPNQPGVAGSRLPPGYGNPAVRPPNAMPRPSS
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atggagcccaagccgtcttcggcggcgcacggtgacgcgcccgcggccgaggccccccgc
cgccgcggcggcggcggcaagcgcaagtcgtccgggtcctcgttcacgccgtcgaagcgg
caggccaaggagaggaacgctgccttccacgtgcccccgcacctgctgcacagcgggcca
ctcacccgcgccgcgcgccagtcgccgcacaagctctccggcacgccgccggagacgggg
ccagcgtcatcggcggccgcagctggggatggggtgagcggcgggcagggagaggtcgat
gcgatccggcccgaaagagaggagacgccggcagcggagcagccgctggtggatgaggtg
ttcgaggccgtccgatcccgcggcgccggcgtccatgtggtccctacctttgctggatgg
ttttcatggaaagagatccacctggttgagaagcagaccttgccctctttttttaatggc
aaatctgagaagcggacacctgaggtctatttggcgattagaaattccattatggtgaag
tttcatgccaatcctcagttgcagctggagtccaaagatttggctgagttgtcaactggg
gaggccgatgctcggcaggaagtcttggagttcttggatcactggggcttgataaatttc
cacccatttccaccagctggacaagaggagagtaagcctgaggagagccaagacaattct
catgatgaggataaagcttctttgatcgaacaattgtttaaatttgaaccagttcaatca
tatataatgcctttacccaagaaagaagatgtgggagctccacccccactgcctagcttg
tttcctgatcctgtacttcttgaagatgtagttgcagcagctgagccttctgttgagtac
cactgcaactcctgttcagttgattgctcgcggaagcgataccattgtcggacccaggca
gattttgacctgtgttgtgattgctataatgaaggaaagttcgatccaggcatggccaaa
actgatttcatcctcatggattcttcagaagtttcaggtgctagtggcactagttggact
gatgaagagacattgcttcttttagaaggtttggaaatttttggtggaaaatgggctgag
attgctgaacatgttgctactaaaacaaaagcgcaatgcatgttgcactttcttcaaatg
caaatcgaggaccgcttccatgatggcgaagatattaatcaaaacaccccaggaagcacg
gaacaagccacaactgagaaaggcattgctgaaacatctgagaaaatggaagttgaagat
aaagaggaaggaagagataccgtggatgagaaggtctcggagaaaacagatggaaactgt
gaagaaacaaaacctgaaggtgcaagtgctgttgaaaataaagatactcagaattcaggt
ggcaaagattcagctgcatctccaaacactgaagagccaaaacaatcatctgatgagcac
cctatagtaaaggagaattctggagatgtcgatacttctggtgaaaaactgtcgaatgtt
gctcttgatatcctaaaatctgcattcgaggctgctggtcacagcccagagtatcaaggt
tcatttgctgctgcaggaaacccagttatggcgctagcagcatttttagctggtcttgtg
gaagatgataacgctactacttcatgccgtagttcactaaaagctatctctgaggtgtct
cctgcgcttcaattagctagtaggcactgttttattcttgaggatccaccaaatgatctg
aaggacatttatgttagtgtaagtaataaaagtaataaaagtacagatggtgatcaaaca
aaagatgaggagatgacccaaaattcagttgacactgagaaaaaagagaacaatgagaaa
gaagataattctttatctatggaaaagcataataattcatccatctcacataatgaccac
caagaatcagatgataagagcatctcacgtgatgattgccccgtagtggagcccaaaacc
agtaatgctaaggagtcaggtgattcaactgctattgtggataagagtgcaaccgacaat
acaaaaggtttaacatgttccgttcaagattcagttattcttgataatgtgaacgaatgt
ggtttattagcttctccagtggttgttgcaggaagtaacatatgtgcaagtgatcctaaa
caagtaaaggacaaaccaagtgttgaggtggaggctcgtgatgattcatcttcaaaaggc
aaggatgagctcaataagactgaagatgcagttgcttcaccagctaacgtacaggaacaa
aagcaaagtgaaacattggaaaatggcaaaatgggagaacctaacagcatcgaaagtgta
gttgccaatgaagagaagggctctggagttaccgctaaccagaatgattccattacgagg
ctcagacgagcagcagccactgctatttcagcagctgctgtgaaagctaaatttcttggt
gatcaggaggaatatcatattcgaaggttgacagcaatgatgatcgaaaagctgttccaa
aagatagaagtgaagatgtcattatttgctgagattgagcaggtggtccttcgaacaaga
gagtacaccgagaagacccgaaagaagctcctattggagcgaaatgcgataattgcagct
cgcatgggggcattgccatctaggccaaatcagcctggtgtagctggaagcagattaccg
cctggatatggcaaccccgctgtaaggccgccaaacgcaatgccacggcccagcagctga
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