Setaria italica (foxtail millet): 101771207
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Entry
101771207 CDS
T02818
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101771207
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101771207
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101771207
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101771207
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Peptidase_M9_N
DUF5646
Motif
Other DBs
NCBI-GeneID:
101771207
NCBI-ProteinID:
XP_004982290
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Position
IX:9945527..9955187
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AA seq
865 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTENANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALMDARKQIEREMERFKVCEKETKTKAFSKEGLGQQPK
TDPKEKAKAETRDWLNTVVSDLESQIDNFEAEVEGLSIKKGKQRPPRLVHLEKSITRHKA
HIKKLESILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVEDLYSTLPMEKVEA
LEDMVSLAPSSLVKGVASVSTSAVLSTKTSSVATSSTQPTVSTTTSQSTSQDQTEETASQ
ESNPESMPQTPPSKGGNLGPSVPVVPIAISTGSVPVSVPAETINSPVRPTVPTTAAAILS
SATPRSAPESTPVVTSIPANLSGTLKDDDSMSFPPRRPSPAITEIGIGRGIARGVTSQTL
GTAPISIGPVPGNGSVSALPAINDLSKRNLLNTDERINSGGLSQQLVSPLGNKVQPQQLP
RTNDAISSDSASTNENPILGGRVFSPPVVSGVQWRPQTAAAFQNQSETSQFRGRPEISAD
QREKYLQRLQQVQQQQGSLLNVPHIAGINQKQFPTQQPNPLLQQFNSQSSSISSQVNLGL
GAQGSDAGHVKSEEQQQSLAEDVGVESAATTGANKQTSEDDTKIPYPNPSAPATENTQLP
RDTDLSPGQPLQPGMSSSAVGVIGRRSVSDLGAIGDNLTGTSASSGHDQLYNLQMLEAAF
HRLPQPKDSERAKNYVPRHPAVTPASYPQIQAPIVSNPTFWERIGSDTLATDMLFFAFYY
QQNTYQQYLAARELKKQSWRFHRRYNTWFQRHVEPQVTTDEYERGSYVYFDFHVTEDGSG
WCQRIKNDFTFEYNYLEDELSVQTN
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccagtcggaagctgcagggcgagatcgaccgcgtcctcaagaaggtccaggag
ggcgtcgacgtcttcgacagcatctggaacaaggtctacgacaccgagaatgcgaaccag
aaggagaagttcgaggcggacctcaagaaagagatcaagaagctgcagcggtacagggac
cagatcaagacgtggatccaatccagcgagatcaaggacaagaaggttagtgcctcttat
gagcaggctctgatggatgcccgtaagcagattgaacgagagatggaacgatttaaagtt
tgtgagaaggaaacaaaaaccaaggccttctcaaaagaagggttaggtcagcaaccaaaa
actgatcccaaagagaaggccaaagctgaaacgagggattggcttaatactgtggttagt
gatttggaaagccagattgataactttgaagcagaggttgaagggctttcaattaaaaag
ggaaaacaaagaccacctcgactggtacatttagagaagtctattacgcggcataaagct
catataaagaaattggagtcaatcttgagacttttggataatgatgagttgagtcctgag
caagtcaatgatgttaaagatttccttgaagactacgttgaacgtaatcaggaagacttt
gatgaattcagtgacgttgaggatctctatagcacattgcctatggagaaggttgaagca
cttgaagacatggtttcacttgctccttccagtcttgtgaagggtgttgcttctgtttcc
accagtgcagttttgagcacgaagacttcttcagttgcaacttcatctactcagcctact
gtatcaacaactacttcacaaagtacatcacaagatcaaacagaggagacggcttcacaa
gaaagcaatcctgaatctatgccacaaacgccaccttcaaaaggtggaaatcttggacct
tcagtgccagttgtgcccattgctatcagtactggtagcgtgcctgtttctgtccctgcg
gaaaccattaattcccctgtgcggccaactgttcctaccacagcggctgcaatactttct
tctgctactccacgaagtgctcctgagagtacacctgttgtaacctcaattcctgcaaac
ttatctggcaccttgaaggatgatgacagcatgagttttcctccacgaagaccatctcct
gccattactgaaattggaattggcaggggcatagcccgtggagtaactagtcagacatta
ggtacagctcccataagtattggtccagtccctggaaatggatcggttagtgcactccct
gcaataaatgacttgtccaaaagaaatctattgaacactgatgagagaattaacagtggt
ggtctttctcagcagttggtttcgcctcttggtaataaagttcaaccacagcaacttccc
aggactaatgatgcaattagctctgattctgctagcacaaatgaaaaccctattcttgga
ggaagagtattttctcctccagttgtttctggggttcaatggagacctcaaactgctgct
gcatttcaaaatcaaagtgaaactagtcaatttcgtggaaggcctgagatttctgctgac
caaagggagaagtacctacaaagattgcagcaagtacagcagcagcaaggcagtcttctt
aatgttcctcatatagctggcataaatcagaagcaatttccaacacagcagccaaatccc
cttctgcaacagtttaactcacagagttcttctatatcttcccaagtgaaccttgggctt
ggagctcaaggatcagatgctgggcatgtaaaaagtgaagaacaacaacaaagtttggct
gaagatgttggtgttgaatctgctgcaacaactggagcaaataaacaaacaagtgaagat
gacacaaagattccttatccgaatccttcagcacctgcaactgaaaacactcagctgcct
agggacactgatctatcgcctgggcagcctttgcaacctggaatgtcatcatctgctgtt
ggtgttattggccgaagaagtgtatctgatcttggtgcaatcggagataacctcactgga
acttctgcaagttctggtcatgatcagctttataatttgcaaatgctcgaagctgcattt
cacaggcttccacaacccaaggactcagagcgtgctaaaaattatgttccgcggcaccct
gcagtcacccctgctagttacccccaaattcaggcaccgattgtatcgaatcctaccttt
tgggaaagaattggtagtgacacattagctacggatatgctgttctttgcattctactat
cagcagaacacataccaacaatacttagctgctagagaattgaagaagcaatcatggaga
tttcacagaaggtacaatacttggttccagcggcatgtggagccacaagttacaaccgat
gagtatgagcggggctcctatgtgtacttcgatttccatgtcaccgaggacggctcagga
tggtgccaaagaatcaagaatgacttcacatttgagtacaactaccttgaggatgagcta
tcggtacagacaaattag
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