Setaria italica (foxtail millet): 101771371
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Entry
101771371 CDS
T02818
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
sita
Setaria italica (foxtail millet)
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sita03041
]
101771371
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101771371
Spliceosome [BR:
sita03041
]
Complex C
Other components
Complex C specific factors
101771371
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
HA2_N
DEAD
AAA_30
AAA_19
AAA_29
AAA_7
T2SSE
Motif
Other DBs
NCBI-GeneID:
101771371
NCBI-ProteinID:
XP_004968610
UniProt:
K3XF41
LinkDB
All DBs
Position
V:13222572..13234300
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AA seq
700 aa
AA seq
DB search
MSRFWKPGSEKPSTLLVDDEEGGVVFLPSSTSSASSSGFGYASLERQRQRLPVYRYRKAI
LYLVERHATTIVVGETGSGKSTQIPQYLKEAGWADGGRLIGCTQPRRLAVQTVASRVAEE
VGVKLGEEVGYTIRFEDQTNPGMTMIKFLTDGVLIREMMEDPLLTKYSVIMVDEAHERSI
STDMLLGLLKKIQRRRPELRLIISSATIEARSMSTFFNIRRKNSLLGSSDDLPNPEPAIL
SVEGKGYTVEIHYVEEPVSDYLQAAVNTVLLIHEKEPPGDILVFLTGQDDIDAAVKLLNE
EIQQLGRHYLDLLILPLYSGLPRGDQDLIFAPTSKGKRKVVLSTNIAETSLTLEGVVYVV
DSGFSKQKCYNPISDIESLVVAPISKASARQRAGRAGRVRPGKCFRLYTEEYYLNEMQSE
GIPEMQRSNLVSCIIQLKALGIDNILGFDWPASPSPEAMIRALEVLFSLGILDEDAKLTV
PIGFQVAEIPLDPMISKMILSANDFGCSDEILTIASFLSVQSVWVSVRGVKKEFDEVKLR
FAAAEGDHVTFLNIYKGFHQSGKSSQWCYKNFLNYQALKKVVDIRGQLLRIVKSFGIPLK
SCDRDMQAVRKAIIAGSFANACHLEEYSQNGMYKTIRTSQEVYIHPSSVLFRVNPKWVVY
QSLVSTDKHYMRNVIAIEPSWLTEAAPHFYQFRTPNPALH
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggttctggaagccggggtcggagaagccgagcaccctgctcgtcgacgacgag
gagggcggagttgtcttcctcccctcctccactagctccgcatcctcctccgggtttggg
tacgcgagcttggagaggcagcggcagcgtctgccggtgtacaggtaccgtaaggccatc
ctctacctggtcgagcggcacgccaccaccattgtcgtcggcgagacaggcagcggcaag
tccacacagatccctcagtacctcaaggaggctggttgggctgatggtggtcgacttata
ggatgcactcagcccagacgattggctgtgcagacggttgcatcaagggtagctgaagaa
gtaggcgtgaaacttggagaagaagttggttatacaatccgattcgaagatcaaacaaat
ccgggtatgactatgataaaatttctcacagatggggtattgattagagaaatgatggaa
gatcctcttcttaccaaatatagtgtaattatggtggacgaagctcatgaaagatccatc
tcaacagacatgttgctgggactcctgaaaaagattcaacgtcgccggcctgagttgcgt
cttatcatctcctctgcaacaattgaagcaagatcaatgtcaactttcttcaacattagg
cggaagaattcgttgcttgggtcttctgatgatttgcccaacccagaacctgctatactt
tctgttgaaggtaaaggatacactgtggaaattcattatgttgaagaacctgtctcagac
tacttacaggctgccgtgaatactgtacttcttattcatgaaaaggaaccaccaggggat
atcttggtattcttaactggtcaggatgacatagatgctgctgttaaattgctgaatgaa
gaaattcagcaacttggaagacactatctggacttgctgattttgcccttgtactctggc
cttccgcgcggagatcaagatctcattttcgctcctacttcaaaagggaaaaggaaagtt
gtgttatcaaccaacattgctgagacatcattgactttggagggtgtggtgtatgttgtt
gatagtggattttccaagcagaagtgttataatccgatttctgacatcgagagtttagtt
gttgcaccaatatccaaggcctctgcaagacaacgagcaggcagagctggaagagtgcga
cctgggaagtgctttaggctttatacagaggaatattatcttaatgaaatgcagtcagaa
ggaattccagaaatgcaaaggtccaacctggtctcctgcataatacagttaaaagcccta
ggcatagacaacattctgggctttgattggccagcttctccatctccagaggcaatgatt
cgggctctcgaagttctattctccctaggaatccttgatgaagatgccaaattaacagta
cccattggtttccaagttgctgagatccctctggaccccatgatttcgaaaatgatcttg
tcagcaaatgattttggatgctctgatgagatattgaccatagcatcatttctatctgtt
caatctgtgtgggtttctgtgaggggagtgaagaaggaatttgatgaagtgaagcttcga
tttgctgctgctgagggagatcatgtaacgttcctgaatatctacaaaggatttcaccag
tctggaaaatctagccaatggtgttacaagaactttttgaattaccaagcattgaagaaa
gtcgttgacattagggggcagcttctcaggatagtgaagagttttggaataccactgaaa
tcatgtgacagagatatgcaggcagttagaaaggccattattgccggttcatttgctaat
gcatgtcatctggaggaatacagccaaaatggaatgtacaaaacgattaggacatcacaa
gaagtttacattcatccatcttcagttctctttagggtcaatccaaagtgggttgtctac
cagtctctcgtttcaactgacaagcactatatgcggaatgttattgccattgaaccgtca
tggcttacagaagctgcaccacatttttatcagttccggacgcccaacccggctctccac
taa
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