Setaria italica (foxtail millet): 101772489
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Entry
101772489 CDS
T02818
Name
(RefSeq) polyadenylate-binding protein 8
KO
K13126
polyadenylate-binding protein
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03015
mRNA surveillance pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101772489
09123 Folding, sorting and degradation
03018 RNA degradation
101772489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101772489
03041 Spliceosome [BR:
sita03041
]
101772489
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101772489
mRNA cycle factors
Stress granule specific factors
101772489
Spliceosome [BR:
sita03041
]
Complex C
Other components
Complex C specific factors
101772489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_10
RRM_RdRP1_2
RRM_7
BRAP2
Methyltransf_2
Motif
Other DBs
NCBI-GeneID:
101772489
NCBI-ProteinID:
XP_004956317
UniProt:
K3ZRC0
LinkDB
All DBs
Position
II:17426273..17431712
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AA seq
664 aa
AA seq
DB search
MAAQGQAAAAAVSAAAAAGSASESGGGSPAASAAAAAAFPATSLYVGDLHESVQDAQLFD
VFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNPADAARALELLNFTPINGKPIRIMYSNR
DPSSRKSGAGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYGFVQFERD
ESAQSAIDKLNGMLINDKKVYVGPFVRKQDRENVSSNVKFSNVYVKNLSETVTDDELKEM
FGKYGTITSAVVMRDSDGKSRCFGFVNFENADDAAQAVQELNGKVFNDKELYVGRAQKKS
EREMELKEKFEKNIQEVAEKFQNTNLYLKNLEDNVDDEKLRELFAEYGTITSCKVMRDAN
GVSRGSGFVAFKSAEDANRALTEMNGKMVGTKPLYVALAQRKEDRKAKLQAQFSQMRPVA
MAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAFINPQAGFAFQQPLMPGMRPGGPMPNFMM
PMVQQGQQPQRPAGRRAGAGGMQQPMPMGGQQQMFPRGGRGYRYPTGRGMPDPGMHGVGA
VMPSPYEMGGMPIRDAGVSQPVPIGALATALANAPPDQQRLMLGENLYPLVDQLEHEQAA
KVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQTNASPEQQLANLSLNDG
VVSS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcaggggcaggcggcggcggcggcggtgtcggcggctgctgcggctggatct
gcgtccgagtccggcggcggctccccggccgcctcggccgcggcggcggcggcgttcccg
gcgacctcactgtacgtgggcgacctgcacgagagcgtgcaggacgcgcagctcttcgac
gtcttcagccaggtcggcggcgtcgtctccgtccgcgtctgcagggacatcaactcccgc
aagtcgctaggctacgcctacgtcaactacaacaacccggctgacgctgcacgggccctt
gaactgcttaacttcactcctatcaatggaaagcctatcaggatcatgtattctaaccgt
gaccccagctcgcgcaaaagtggtgcaggaaatatatttattaagaatcttgataagtca
atagacaacaaagctttgtatgacacgttctgtgcatttgggaacattctttcatgtaaa
attgctacagatccttcgggagaatcaaggggctatggctttgttcagtttgagcgggat
gaatctgctcagtctgctattgataagctcaatgggatgcttatcaatgacaagaaagtg
tatgttggaccatttgtccgcaagcaggacagggagaatgtctcaagcaatgtcaagttc
agcaatgtttatgtgaagaatctgtccgagactgtaactgatgatgagttgaaggaaatg
tttggaaagtatggaaccataactagtgctgttgttatgagggacagtgatgggaaatcc
aggtgttttggatttgtcaattttgaaaatgcagatgatgctgctcaggctgttcaagag
ttgaacggcaaggtattcaatgacaaggaactgtatgttggaagagcacagaagaagtca
gaaagagagatggagttgaaggagaaatttgaaaagaatattcaagaagttgctgagaag
ttccaaaacactaacctgtacctgaaaaacttagaagacaatgttgatgatgagaagttg
cgtgaactgtttgctgagtatggcactattacttcctgcaaggttatgcgggatgcgaat
ggtgtcagcagagggtcagggtttgttgctttcaaatctgctgaagatgctaaccgagct
ctcacggaaatgaatggcaaaatggttggaaccaagcccctttatgtagctcttgcacag
agaaaagaagacaggaaggcaaagctacaggcacagttttcacaaatgcgtcctgttgcc
atggcaccctctgtaggtcctcgcatgcccatgtttccacctggtgttcctggagttggt
cagcagctgttttatggtcagccacctccagcctttatcaaccctcaggctgggtttgcc
ttccagcaacctctgatgcctgggatgaggcctggcggtccaatgccaaactttatgatg
ccgatggttcagcaaggacagcaaccacaacgtcctgctggtaggcgtgctggtgctggt
ggaatgcagcaacccatgccaatgggtggtcagcaacagatgttccctagaggtgggcgt
ggctaccgctatcccacaggacgtggaatgcctgatcctggcatgcatggtgttggggct
gtgatgccatctccatatgagatgggtgggatgccaattagagatgctggtgtgtcacaa
cctgttccaattggggcccttgccactgctcttgctaacgcaccaccggatcagcagagg
ctgatgcttggtgagaacctgtatcctctagttgaccagctggagcatgagcaggctgcc
aaggtgactggcatgcttttggagatggatcagacagaggtcctgcacctgctggagtcc
ccagatgctctcaaggccaaggttgctgaagccatggaggtcctccgctctgcccagcat
cttcagcagaccaacgcctcccctgagcagcagctggccaatctgtcgctgaatgacggc
gtcgtctccagttga
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