Setaria italica (foxtail millet): 101772852
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Entry
101772852 CDS
T02818
Name
(RefSeq) LOW QUALITY PROTEIN: coatomer subunit alpha-3-like
KO
K05236
coatomer subunit alpha
Organism
sita
Setaria italica (foxtail millet)
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sita04131
]
101772852
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sita04147
]
101772852
Membrane trafficking [BR:
sita04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
101772852
Exosome [BR:
sita04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
101772852
Exosomal proteins of bladder cancer cells
101772852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
TPR_COPA_B
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Fis1_TPR_C
ENTH
Beta-prop_DCAF12
Zn_ribbon_3
Zn_ribbon_19
Motif
Other DBs
NCBI-GeneID:
101772852
NCBI-ProteinID:
XP_022682918
LinkDB
All DBs
Position
V:12345658..12351606
Genome browser
AA seq
1216 aa
AA seq
DB search
MLTKFETKSNRVKGLAFHPRRPWILASLHSGVIQMWDYRMGTLLDRFDEHDGPVRGVHFH
ATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHAEYPWIVSASDDQTIRIW
NWQSRTCVAVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKAVSPADDIMR
LTQMNTDLFGGIDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQIKLXRMNDTKAWE
VDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRIWDATKRTGIQTFRREHDRFWILAAHP
EMNLLAAGHDSGMIVFKLERERPAFSVSGDTVFYVKDRFLRYYEYSTQKEVQVAPIRRPG
TVSLNQSPRTLSYSPTENAILICSDVDGGSYELYIVPKDSAGRSDYLQEARKGAGSSAVF
IARNRFAVLEKSSNNVLVKNLKNEIVKKTSLPIATDGIYYAGTGNILCKAEDRVVIFDLQ
QRLVLGELQAPSVKYVVWSSDMECVALLSKHAIIIANKKLVHRCTLHETIRVKSGAWDEN
GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYITKVIGNNIFCIDRDGKNKLITVDASEYI
FKLALFRKRYDHVMSMIKNSQLCGQAVISYLQQKGFPEVALHFVKDEKTRFNLALESGNI
QIAVASAKELDDKDHWYRLGIEALRQGNVGIVEYAYQRTKNFDRLAFLYLITGYLDKVGF
MCKIAGQNNNFMGQFHNALYLGDVRKRVEILENAGQLALAYVTAVTHGLTEIADRLSAEL
GENVPSVSDGKTSSLLIPPAPLMSCGDWPLLRVMRGIFDAGLDATGRADQEEDYDDAGGD
WGDEDLEIVDVNNVVENGDVVDHNEEEEVNEEEGGWDLEDLELPPEAETPKAVGVARSTL
FVAPTPGMPVSQIWTQKSSLAGEHAAAGNFDTAMRLLSRQLGNKKFCSSEAIVSSMHSWA
AIPFLRAFASAPVIPVAVEKGWSESASPNVRGPPALVFTFSQMDDKLKAAYKATTEGKFP
EALRQFLSILHTIPLLVVDSRREVDEVKELIQIAREYVLGLKMEVKRKELKEDPIRQQEL
AAYFTNCNLQKVHTRLVLTSAMGLCFKGGNYATAANFARMLLENNPNEAQAKKARQVVQA
CGDRKDGRQLNYDFRNPFVVCGATFVPIYRGQKDVSCPYCGSRFMPSVEGELCSICELSV
VGADASGLLCSPTQSR
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgctcaccaagttcgagaccaagagcaaccgggtcaagggcttggccttccacccgcgg
cggccatggatcctggcgagcctccacagcggcgtcatccagatgtgggactaccggatg
ggcaccctgctcgaccgcttcgacgagcacgacgggcccgtcaggggcgtccacttccac
gccacgcagccgctcttcgtctccggaggtgatgattacaaaataaaggtgtggaactac
aagactcaccgctgcctcttcacgctccacggccacctcgactacattcgcaccgtgcag
ttccatgccgagtatccttggattgtcagtgctagtgacgaccagacaatccggatctgg
aactggcagtcgcgcacctgtgtcgccgtgctcacgggtcataatcattatgtcatgtgt
gcctccttccatcccaaggaggaccttgtggtgtcagcgtctttggaccagactgtgcgg
gtatgggatattggggcactcaggaagaaagcagtctcaccagcagatgacattatgcgc
ctcacccaaatgaacaccgatctgttcggaggcatcgatgctgttgtcaagtatgtgttg
gaaggccatgaccgcggggttaactgggcctcatttcatcccacattacctcttattgtt
tctggggctgatgaccgccaaatcaaactgntgagaatgaatgacacaaaggcatgggag
gttgatactctcaggggccacatgaacaatgtgtcatgtgtcatgttccacgcgaagcag
gacatcattgtgtccaactcagaagataaaagcatccgcatttgggatgccactaagaga
accggcatccagacattcaggcgggagcatgaccgcttctggattcttgctgcgcaccct
gaaatgaatcttcttgctgctggtcatgacagtggcatgattgtttttaagttggagagg
gaacgcccggctttcagtgtgagtggtgatacagtgttctatgttaaggaccggttcctc
cggtattacgaatactccacacagaaggaggttcaggtagctccaatcagaaggcccgga
acagtcagcttgaatcagtcaccaagaacattgtcatatagtccaactgagaacgcaatc
ttgatatgttctgatgtggatgggggctcgtatgagctgtacattgtgcccaaggactct
gccgggaggtctgattatttgcaggaggcaaggaagggagctggtagttctgcagttttc
atagcccgcaatcggtttgcagtgctggagaagagcagcaacaatgttttggttaagaac
cttaagaatgagattgtgaagaaaacctctcttcctattgcaacagatggaatttattac
gctgggactggcaacatattgtgcaaagctgaagacagggtggtaatctttgatctgcag
cagaggcttgttctcggcgaactccaggcaccttctgttaagtatgtagtttggtccagt
gatatggagtgtgttgcactgctgagcaagcatgccattatcattgcaaacaagaagctt
gtccaccgctgcacgcttcatgaaaccatacgtgtgaagagtggtgcctgggatgaaaat
ggtgtattcatatacaccactctgaaccatatcaagtattgtcttcctaatggtgatagt
ggcatcatcagaacacttgatgtcccaatttacataaccaaagttattgggaataacatc
ttctgtatagaccgtgatggaaagaacaagttgataacggttgatgcttctgaatacatt
ttcaagcttgcccttttccggaaacgctatgaccatgtcatgagcatgattaagaactcg
cagctatgtgggcaagctgtgatttcttatttgcaacagaaagggtttccagaagtcgcc
ctccactttgtaaaagatgagaagacaagatttaacctggctcttgaaagtggaaatatc
cagattgctgttgcttcagcaaaggagcttgatgacaaggatcactggtacaggttggga
attgaggctctgaggcagggaaatgttggtatagttgagtatgcataccagcggactaag
aattttgacaggcttgcttttctgtatctcataacaggttatttggacaaggtgggcttt
atgtgtaagatagctgggcagaataacaatttcatgggccagttccacaacgcactttat
ctcggggatgtacggaagcgagttgaaatcttggagaatgcagggcagctagctcttgcg
tatgtaacagctgtcactcatgggctcacggaaatcgctgataggctttctgctgagttg
ggggagaatgtcccttctgtatcagatgggaaaactagctcactgttgattccgcctgct
cctcttatgtcttgtggtgactggcctttgttgagggtgatgcgtggtatatttgatgct
ggtctagatgctactgggagggcagatcaggaggaagactatgatgatgctggtggtgat
tggggtgatgaagatcttgagattgttgatgtgaacaatgtggtggagaatggagatgtc
gttgaccacaatgaggaagaggaggtgaacgaagaggaaggtggctgggaccttgaagat
ctggaattgccaccagaggcagaaacaccaaaggctgttggtgtggcccgctccactttg
tttgtggctccaacgccaggtatgcctgtcagccaaatttggacgcagaagtcttccctt
gctggggagcatgctgcagctggcaactttgacactgcgatgcggctgcttagccgccag
cttgggaataaaaaattttgctcctctgaagccattgtttcctcgatgcactcatgggca
gccatacctttcctgcgtgcatttgcaagtgctccggttatacctgttgctgttgagaaa
ggatggagtgaatctgctagtcctaatgtgaggggcccacctgcacttgtgtttaccttc
tcacaaatggatgacaagcttaaggctgcatataaagccacaaccgagggtaaattcccg
gaggcactgaggcagttcctgagcatcctgcacacgatcccgctccttgtggtggactcg
cggagagaagtggatgaggtgaaggaattgattcagatagcgagggagtatgtccttggt
cttaagatggaagttaaaaggaaggagctgaaagaagaccccatcaggcagcaggagctg
gctgcctacttcactaattgcaacctgcagaaggtccacacgcggcttgtcctgactagc
gctatggggctttgcttcaagggtgggaactatgctactgcagcgaattttgcgcggatg
cttctggagaacaaccctaatgaggcccaggcaaagaaggctcggcaggttgtgcaggcc
tgtggggataggaaagatgggcgccagctgaactatgactttagaaatccatttgtggtg
tgtggggcaacctttgttccaatataccgtggacagaaggatgtttcttgtccgtactgt
ggatctcggttcatgccctcggtggaaggtgagctgtgtagcatatgcgagctctcagtg
gttggtgcggatgcttcaggcctcctctgctctcctacacaatcgagataa
DBGET
integrated database retrieval system
