Setaria italica (foxtail millet): 101772885
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Entry
101772885 CDS
T02818
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X2
KO
K06672
cohesin loading factor subunit SCC2
Organism
sita
Setaria italica (foxtail millet)
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sita03036
]
101772885
Chromosome and associated proteins [BR:
sita03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
101772885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
Cnd1
INTS1_R4
HEAT_2
PHD
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
101772885
NCBI-ProteinID:
XP_004955329
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All DBs
Position
II:172179..186118
Genome browser
AA seq
1766 aa
AA seq
DB search
MDPGAAGAGGGTRAGFERACRLPNTVHSEIAARVAGSPPSRLALGFDDLRDDEPLAAPDR
PDMIMQAANIARILAETDVSHLGFTEADNIDVDPSQCSWLWMEVLKHNPDAFKVKAPAPP
PSLQGPHEGPEYQNQSEMHFEYLTSNMNKARKEPVFPLDDINSRREHLRNELTPDSVASK
KPKVRKKENGNSVSSSGPSIPNSQEVIANFCEMVEDFCGRVEIPDDADGGDWLSIPLNDV
KVLVNEITSVRSKRILHEVPMDTVTRLLHVIDRQIRCSQGLSIDEKENPDAEPMVFSALE
SVHAALAIMTHHDMPKQLYREKYLIERIIDFSRRQITDCMAASNPTFRAIHKPAENVAND
GDDDEEDMENGPVSKKRRTTTNLTARKSSSNRVSASVYSAVQKLCLVLGFLKELLTTVRL
SDSCILQLAKTCFTTFLVDNMQLLQLKAIGVIGTVFSSYTQHRSYLVDETIVLLRKLQFS
RNAVRTYHLADEEQKQIQMITALLVHLVQFSAIVPDSLKGTVDWSTIIDAPVDASYPIKC
HEAATEACCLFWTSVLQRFTAAKSQDMSEAKGIIDNLVQDLLTILNLPEYPAAASVLEVL
CVLLLQNAGLKSKDTNARCFAIDLLGGIASRLKRDSVTCSEEKLWILQELTDAGSDGSKI
LKNKCCVCLGGRGINIACDVCGRCFHSDCMGASSQDNLQHDSVCPLCFCKQQLSVLQSYC
QLQTKENGKRTAASVSKKSAAPSEVPALDIVQQILLSYLQEAGPQDDGNLFTRWFYLCIW
NKDDPHSQEKIIYYLARLKSKEILRDSGNGLVISRDWAKKICLALGQKNSFSRGFDKILA
LLLASLRENSPVIRAKALRAVSSIVEADPEVLGDKRVQSAVEGRFCDSAISVREAALELV
GRHIASHPDVGLKYIEKVAERIKDTGVSVRKRAIKIIRDLCASNPNTDTTHAFVEIISRV
NDEESSVQDLVCKTFHELWFEEPTGSHKHLVADGSSVPMEIAKKTEQIVEMLRKMPNHQP
LITIIKRNLTLDFLPQSTKATGINLSMVASLRKRCELICKRLLERILQVEEGAANEMEIH
ALPYIIALQAFCIVDPTLCIPVTDPSKFVVTLQPYLKIQIDNKSAAQLLESIIFVIDAVL
PLIRKPPQTVVVELEQDLKQMIVRHSYLTVVHACIKCLCSLSKSAGRGPGLLEYLVNVFY
KHLSGTNTDSQLLGRSLFCLGLLLRYGYQLMLTSENQLDFPKIINLLQRRYLLRDDFNLK
VRALQTLGYILIAKPEFMLQKEIMNLIEATLSSAVDHRLKIQGLQNLYEYLRDAESQLTA
ESTGKPPVQSAINGGSEVPVAAGAGDTNICGGIIQLYWSSILERCLDTNDQVRQSALKIV
EVVLRQGLVHPITCVPHLIALEMDPLEGNSKLAHHLLMNMNEKYPSFFESRLGDGLQMSF
IFFETTVSNHKLAANVKSNPIAFVKPGITRIYRLIRANRNSRNKFVHSIVRKFEPDGRNR
STVSFLVYCAEVLASLPFTCPDEPLYLIYDINRVIHLRAGAIEANLKRWTSMDQPQDAAG
MATLPGESHVVMHEPGGYYDHNEGYIPVRVNNNPCSTSDVDMAKVQEDCHDAIALQLLLK
LKRHLKIVYSLTDARCQAFSLKEPPKTGETLSKQNVPFNIGNNNISLPSCLQDVASVYQD
FKTVLREDSMDFGMYTPSVQRKRPTPRSTSRVRRTAATSVTRARGGGRGGDDDDTDDDDW
TGGPRVLDFSAQASNGGRVTRQRVQV
NT seq
5301 nt
NT seq
+upstream
nt +downstream
nt
atggaccccggcgccgccggcgccggcggcgggacccgggccggcttcgagcgggcgtgc
cgcctgcccaacaccgtccactccgagatcgcggcccgcgttgccggctccccaccctcc
cggctcgcgctcggcttcgacgacctccgcgacgacgagcccctcgccgcgcccgaccgc
cccgacatgatcatgcaggcagcaaacatcgcccgcatcctcgccgagaccgacgtctcc
cacctgggcttcacggaggccgacaacatcgacgtcgaccccagccagtgctcctggctc
tggatggaggtgctcaagcacaaccccgacgccttcaaggtcaaggcccctgcgcccccg
ccgtctttgcaaggtccacatgaaggcccagaatatcaaaatcaaagtgagatgcatttt
gagtatcttacgtctaatatgaacaaagcacggaaggaacctgtatttcctctggatgac
atcaactcacgcagagagcatcttcgtaatgaactaacgccagattcagttgcttcaaag
aagccaaaagttagaaagaaagaaaatggcaattctgtttcaagttctggccccagcatt
cctaatagtcaagaagttatcgccaacttctgtgagatggtggaggatttctgtggaaga
gtcgaaattcctgatgatgcagatggcggtgattggttgtcaataccacttaatgatgtt
aaggttcttgtcaatgaaattacatctgttcgatccaaaaggatattgcatgaggttcct
atggatacagttacaaggttattacatgtgatagaccgtcagatccgatgttctcaaggt
ttgtcaatagatgagaaggaaaatcctgatgctgaacctatggttttctcggctttggag
tccgttcatgcagcgttagcaattatgacccaccatgacatgccaaagcaactgtatcga
gagaagtatcttattgagcgaattattgatttctcaaggcgtcagatcactgactgtatg
gcagcaagtaacccaaccttccgagctatccacaaaccagctgaaaatgttgcaaatgac
ggagatgatgatgaagaggatatggaaaatggaccagttagcaaaaagagacgtaccact
actaatctaactgcgagaaaatcttcttcaaacagagtttctgcttctgtttactctgct
gtccagaaactatgcttggtattgggctttctcaaggaactgctcacaacggtgcgctta
tcagatagttgtattctgcagttagcaaaaacctgctttactacattcttggtggacaat
atgcagctattacaattgaaagcgattggggttattggcacggttttttcatcatacaca
caacacaggagttacctggttgatgaaacaattgtccttcttcgtaagttgcagttttca
agaaatgctgttagaacctaccatctggcagatgaagaacaaaagcaaatccagatgata
acagcactgttagttcacctggttcagtttagtgcaattgttcccgatagcttaaaggga
acagttgattggagcactattattgatgccccagttgatgctagttatccaattaaatgc
catgaagcagcaacagaggcttgttgccttttctggactagtgtccttcaacgttttact
gctgctaaatctcaagatatgtcagaagccaaaggaataatagataatcttgttcaggat
ttgctaacgatacttaacttgccggagtatccagctgctgcttctgttcttgaggttctc
tgtgtattgctgcttcaaaatgctggattaaaatctaaggacactaatgctcggtgcttt
gctattgaccttcttggtggtatcgcatcaaggttgaagcgtgattctgtcacctgtagt
gaggagaagctttggatattgcaagagctcactgatgcaggtagtgatggctcgaaaatt
ttgaaaaacaaatgttgtgtttgtcttggtggaagaggtataaatatagcctgtgatgta
tgtggaagatgtttccattcagattgtatgggggctagcagtcaggataacttacagcat
gatagtgtctgtcccttatgtttttgcaaacaacaactcagtgtgttacagtcgtattgc
cagttacaaactaaagagaatggcaaaagaactgctgcctcggttagtaagaaatctgcc
gcaccatctgaggtgccagcattggatattgtgcaacaaatactactgagttatcttcag
gaagctggtccacaagatgatgggaacctgtttactcgatggttctatctatgtatctgg
aacaaagatgacccacattctcaagagaagattatctactatctagctagattaaaatct
aaggagattctgcgtgattctggcaatggtttggtaatttccagagattgggcaaagaaa
atttgcttggcactggggcagaagaattcattttcgagggggtttgataaaattcttgcc
cttcttttggctagcttgagagaaaattctcctgtaataagggcaaaggctttacgtgcg
gtcagcagtatagttgaagctgaccctgaggtcttgggtgacaaacgtgtacagtctgct
gttgaagggagattttgcgattcggctatttctgttcgtgaagctgcccttgaacttgtt
ggaaggcatattgcttcacatcctgatgtaggcctgaagtatattgaaaaagttgctgag
cgaataaaggacacaggagtaagtgttcgcaaacgtgcaattaaaattataagggatctt
tgtgcttcaaatccaaacacggacacaacgcatgcctttgtggagattatttctcgtgtt
aatgatgaggagtccagtgtacaggatcttgtatgtaaaacatttcatgagctatggttt
gaagaacctactgggagtcataagcacttggttgctgatggtagttcagttcctatggag
attgctaaaaagactgagcaaattgttgaaatgttgaggaagatgcccaatcaccaaccc
ttgattaccattataaaacgtaacttgactcttgatttcctccctcagtcaacaaaggcc
acaggcattaacttgtccatggtggcatcacttaggaaacgttgtgagttgatatgcaag
cggttgttagaaagaatattgcaggttgaagaaggagctgctaatgagatggaaatccat
gcacttccttatatcattgccttgcaagcgttttgtattgttgatcccaccctctgcatt
ccagtgactgatccttctaagtttgttgtgacactacaaccatatcttaagattcagatt
gacaataaatcagctgcccagttgcttgaaagtataattttcgtgattgatgctgttctt
ccactcataaggaagccaccacaaactgtggttgtagaacttgagcaggatctgaagcag
atgatagttcgtcattcctatttgacagttgtacatgcatgtatcaagtgcctttgttcc
ctaagcaaatcagctggtagaggtccaggattactggaataccttgttaatgttttttac
aagcatctgtctggcactaatacagatagtcagctgttgggtcgatcgctgttttgtctt
ggactgctccttcggtatggttatcaactgatgttaacatctgaaaatcagcttgatttc
ccaaagattatcaacttgctccagagaagatatcttctcagggatgatttcaacttgaag
gttcgagctttgcagactttgggatacatacttatcgcgaagcctgaatttatgctacaa
aaagaaatcatgaatctcatagaggcaacactatcttctgcagttgatcataggttaaag
attcaaggacttcaaaacctctatgagtatctccgagatgccgaaagccaacttactgct
gagagtactgggaagcctcctgtacagtctgcaataaatggtggaagtgaagttcctgtt
gctgctggtgctggagacaccaacatatgtggtggtattatccaattgtattggagttct
attcttgaaaggtgcttggatacaaatgaccaagttcgccagagtgcacttaagattgtt
gaagttgtacttcgccagggtttagttcaccctattacatgtgttccgcaccttatagca
cttgaaatggacccattggaggggaactcaaagttggctcatcatctactaatgaatatg
aatgaaaagtatccttcattttttgaaagccgcttaggtgatggcctacaaatgtcattt
atattcttcgagaccacagtcagcaaccataaactcgcagcaaacgtgaaatcaaatcca
attgcttttgtcaaacctggcataactagaatataccgtcttatccgtgcaaatcgaaat
tcaagaaacaaatttgtccactcaatagttcggaaatttgagcctgatggccggaatcgc
tccacagttagctttcttgtatactgtgctgaagttcttgcctccctgccattcacatgc
cctgatgaaccactctatttgatctatgatataaatcgagttattcacttgagagcagga
gcgattgaggccaatttgaaaaggtggacttctatggatcagcctcaagatgcggcgggt
atggcaacattgccaggagagagtcatgttgtcatgcatgagcctggaggatattatgac
cataatgagggatatattcctgtaagggtgaataacaatccttgtagtacatcagatgtg
gacatggccaaagttcaggaggattgccatgacgcaatagccctgcaactcctcctcaaa
ttgaaaagacatttgaaaattgtttatagtttaactgatgcccgctgtcaggcattttct
ctaaaggaaccaccaaaaactggagaaactctctccaagcagaatgttccttttaacatt
ggcaacaataacatcagtctgccgagctgcctgcaggatgtagcttctgtgtaccaagat
ttcaagacagtgctgcgggaagattccatggacttcggtatgtacaccccctctgtgcag
aggaagcgcccaaccccaagaagtacgtcgagagtcaggaggacagccgccacaagtgtt
acaagagcccgtggcggtggccgtggtggtgatgatgacgatactgacgatgacgactgg
actggggggccaagagtgctggacttcagcgctcaggcaagcaatggtggccgtgtaaca
aggcaaagggtccaagtatga
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