Setaria italica (foxtail millet): 101773131
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Entry
101773131 CDS
T02818
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101773131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sita03041
]
101773131
03009 Ribosome biogenesis [BR:
sita03009
]
101773131
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101773131
Spliceosome [BR:
sita03041
]
Complex A
U1 snRNP components
U1 related factors
101773131
Complex B
101773131
Ribosome biogenesis [BR:
sita03009
]
Eukaryotic type
Pre-60S particles
Helicases
101773131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
101773131
NCBI-ProteinID:
XP_004971011
UniProt:
K3XG22
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All DBs
Position
V:complement(44472769..44476980)
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AA seq
569 aa
AA seq
DB search
MNPYDVRFVDPSSYHDRRSDLAVAPVVAPPVAMPAANPYAAAYPPVPAASAGGDYPRYGQ
GGRGRGGGGRGGGGGYGGGGGYGGGGRGGRGRDGLDTLALPKPDFRSLIPFEKNFYVESP
SVQAMSDADVAQYRRLRDITVEGRDVPKPVRYFQEANFPDYCMQAIAKSGFVEPTPIQSQ
GWPMALKGRDLIGIAQTGSGKTLSYLLPGLVHVGAQPRLEQGDGPIVLILAPTRELAVQI
QEESTKFGSYSRTRSTCVYGGAPKGPQIRDLRRGVEIVIATPGRLIDLLEAGHTNLRRVT
YLVLDEADRMLDMGFEPQIRKIVAQIRPDRQTLYWSATWPREVEALARQFLQNPYKVTIG
SADLKANHSIQQIVEVISDQEKYPRLSKLLSDLMDGSRILIFFQTKKDCDKITRQLRMDG
WPALSIHGDKAQSERDYVLAEFKSGKSPIMAATDVAARGLDVKDIKCVINYDFPTTLEDY
IHRIGRTGRAGASGTAFTFFTHANAKFSRNLVKILREAGQVVNPALESMSKSASSSGGGN
FRSRGRGGFGNRGHISGSNSFPLGGRRPY
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaatccctacgacgtccgcttcgtcgatccctcctcgtaccacgacaggcgcagcgac
ctggccgtggctcctgtggtcgctccgccggtcgccatgccggcggcgaacccttacgcc
gccgcgtatccgcccgtgcccgcggcctccgctggcggcgactacccgcgctacgggcag
ggcggcagaggccgtggtggaggtggcagaggcggtggaggcggctatggaggtggcggt
ggctatggtggtggcggcagaggagggcgcggcagggacgggcttgacacgctcgccctg
cccaagcctgacttccggagcctgataccgtttgagaagaacttctacgtggagtctcct
tccgttcaggctatgtcggacgctgatgtggcccagtaccgccgtctccgggatatcacc
gttgagggccgggatgtgcccaagccggtccgatacttccaggaagccaacttcccagat
tactgcatgcaagcaattgccaagtccgggtttgtcgagccgacacctattcaatctcaa
ggctggcctatggctctgaagggtagggacctgattggtatcgctcaaacgggctcaggg
aaaacattatcttatctgctacctgggttagttcatgttggtgcccagcctcggctagag
caaggtgatggcccaattgtattaatcctcgccccaacaagagaacttgctgttcaaata
caggaagaatctacgaaatttggatcatattcaagaactagaagcacatgtgtctatggt
ggtgcacctaagggtccacaaatacgtgaccttagaagaggagttgaaattgtcattgca
actcctggccggttgattgatttgctggaagctggtcacacaaacctacgtagagtgaca
taccttgtgctggatgaggcagaccggatgctagatatgggtttcgagcctcaaattcga
aaaatagttgcacagatccggccagacaggcaaaccttgtattggagtgccacatggcct
agagaagttgaagccttagctagacagtttctgcaaaatccttacaaggtaacaatagga
tcagctgaccttaaagctaatcattccatacaacaaattgttgaagttatttcagatcag
gagaagtatccgagactcagtaagctattgtctgatctaatggatgggagccgtatcttg
atatttttccaaacgaaaaaggactgtgataagatcaccaggcaacttagaatggatggg
tggccagcgttatctatacatggtgataaagctcagtctgaaagagactatgttcttgca
gagtttaagagcggcaagagtcccataatggctgccacagatgtagcagcacgcggtctt
gatgtgaaggacataaagtgtgtgataaattatgattttccaacaactcttgaagactat
attcacaggataggtcgaactggccgtgctggtgccagtggaactgcatttacattcttc
acacatgcaaatgcgaagttctcaaggaatctagtcaagattctgcgggaagctggccaa
gttgtgaatcctgcactagaatctatgtccaaatccgcaagttcatctggaggaggcaat
ttccggtcgaggggcagaggtgggtttggtaaccggggtcatatatctggatcaaatagc
tttcctttaggaggaagaaggccatactga
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