Setaria italica (foxtail millet): 101773491
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Entry
101773491 CDS
T02818
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X2
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101773491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101773491
03012 Translation factors [BR:
sita03012
]
101773491
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101773491
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101773491
Translation factors [BR:
sita03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
101773491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
nSTAND3
NACHT
ABC_tran
BEX
AAA_19
Motif
Other DBs
NCBI-GeneID:
101773491
NCBI-ProteinID:
XP_004982898
LinkDB
All DBs
Position
IX:17018500..17027639
Genome browser
AA seq
902 aa
AA seq
DB search
MDRIYLQTWPRDKGFTYSNAYNKGKTLVFSKVPLPDYRADLDERHGSTQKEIKMSNQTER
RVEDLLSRSKLNTSDSASTSNVSIRQSLPSTSSSVVERATDVDKEKLSSQLRDLQNSRKM
AASARSMQSFREKLPAFNMREGFLKAVAANQVLVISGETGCGKTTQLPQFILEEEIDNLC
GADCSIICTQPRRISAISVAARVAAERGEELGETVGYQIRLESKRSAQTRLLFCTTGVLL
RRLAQEPDLVGVSHLLIDEIHERGMNEDFLIIILRDLLPRRPDLRLVLMSATINAELFSK
YFGDASIMHIPGFTFPVAEFFLEDVLEKTRYKIKSERDSSAGSSRRKRLSSVKSDPLSDL
FEDIDIDKEYGNYSITTRQSLEAWSAAELDLSLVESTIEYICRYEAEGAILVFLTGWDEI
SKLLDKIKGNTFLGSSNRFLVLPLHGSMPTVNQREIFDRPPANMRKIVLATNIAESSITI
DDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGFCYRLYPKVIH
DAMPQFQLPEILRTPLQELCLTIKSLQLGAVSSFLAKSLQPPDPLSVNNAIELLKTIGAL
DDMEELTSLGRHLCTLPLDPNLGKMLLMGSVFQCLDPVLTIAAALAYRNPFVLPIDRKEE
ADAVKRSFAGNSCSDHIALLKAFVAWNEAKRSGRERSFCWENFLSPMTLKMMDDMRNQFF
DLLSDIGFVSKTRGVKAYNQYGSDLEMVCAVLCAGLYPNVVQCKRRGKRTAFYTKDVGKV
DIHPSSVNAFVNQFPLPYLVYSEKVKTASIYVRDSTNISDYALLLFGGSLSPSKTGEGIE
MLGGYLHFSAPKRTIELIQRLRGELDKLLQRKIEEPGVDIFSEGMGVVAAAVELLHSQNE
YH
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atggacagaatatacttgcagacatggcccagagacaagggatttacttatagtaatgcg
tacaacaaagggaagacacttgttttcagtaaggttccactacctgattatcgagcagat
cttgatgagaggcatggatcaactcaaaaagagattaagatgtctaatcagacagagagg
cgagtggaagatctcttatccaggtcaaagttgaataccagcgattctgcaagcacttct
aatgtatcaataaggcaatctttgcctagcacatcctcatcagttgttgaacgagcaaca
gatgttgataaagaaaaactcagttctcagcttagggatttgcagaattcaaggaagatg
gcggcaagtgctagatcaatgcaatctttcagggagaaattacctgcattcaacatgaga
gaaggatttctgaaagcagtagcagctaatcaggttctggtcatatctggtgagacaggt
tgtggtaaaacaacccagcttccacagttcattctagaagaagaaatagataacctttgt
ggtgctgattgcagcataatctgtactcagccccgccgtatatctgccatatcagtagca
gcaagagtagctgctgaaagaggtgaagagcttggtgagactgttgggtaccagattcgc
ctagaatcaaaacggtctgcacaaacacgactgctgttctgcactactggagttttgctt
agaagactggctcaagagccagacttagttggtgtaagtcatttactaattgatgagatt
catgaacgtggaatgaacgaagattttctgatcataatactgcgtgaccttctaccaaga
cgtccagaccttcgccttgtattgatgagtgcaactataaatgcagaactgttttccaag
tactttggagatgcttcaataatgcacatcccggggttcacttttcctgttgctgagttt
tttctggaagatgtcttagaaaagactcgttacaagatcaagtccgaacgtgatagttct
gcaggtagttcgagaagaaagaggctttcgtcagttaagagtgatccattatctgatctt
tttgaggacattgacattgataaggaatatggaaattacagcattacaacgaggcagtcc
cttgaagcttggtctgctgctgaactagatttgagccttgtagaaagtacaattgagtat
atttgtcgctatgaagcagaaggtgcaatccttgtgttccttactggctgggatgaaatt
tcgaaacttcttgacaagattaaagggaatactttccttggaagttcgaacagattcctt
gttcttcctttgcatggctctatgccaactgtcaatcagcgtgaaatttttgacagaccg
ccagcaaatatgagaaaaattgttctagcaaccaatattgcggagagtagtattacaata
gatgatgttgtctatgtaattgattgtggtaaggccaaggaaacaagctatgatgccttg
aacaagcttgcatgccttctaccatcgtggatatcaaaagcttctgctcatcagaggcga
ggccgtgcaggccgcgttcagccagggttttgctataggctttatccaaaagtcattcat
gatgcaatgccgcagtttcaattgcctgaaattcttaggactcctttgcaagaactatgc
cttactatcaaaagcttacagcttggagctgtatcttcctttttggcaaagtcactgcag
cctcctgatccgctttctgtcaataatgcaattgagcttcttaaaaccattggcgcgctc
gatgatatggaggaactcacatctctaggacgacatctctgtacacttccactggatcca
aaccttggaaaaatgctgcttatgggatccgtattccagtgcctggacccagtattaaca
attgctgctgctcttgcataccgtaatccatttgtgctcccaattgatagaaaagaagaa
gctgatgctgttaaaagatcatttgctggtaactcctgcagtgatcacattgcccttctt
aaggcgtttgtagcatggaacgaagcaaaacggagtggcagggaacgttctttctgttgg
gaaaatttcctgtcccccatgaccctgaagatgatggatgacatgcggaatcaatttttt
gatctactatctgatattgggtttgttagcaagacaagaggagttaaggcatataaccag
tatggtagtgatctggagatggtttgtgctgtattgtgtgctgggctttacccgaatgtt
gtacaatgtaaaaggcgaggcaagaggacagccttctacaccaaagatgtgggaaaagtg
gacattcatccttcatcagtcaatgcatttgtgaaccaatttccattgccttacttggtg
tatagtgagaaggttaagacggctagcatttatgtgagggactcaacaaacatatcggac
tatgcccttttactttttggtggttcccttagtccaagcaaaactggagaaggcattgag
atgctggggggttatcttcatttctcggccccaaagcgtaccatagagttgattcagaga
ttaagaggtgaattggacaaactcctccagaggaagattgaggaacctggagttgacatc
ttttcggaaggaatgggtgttgtggcggcagctgtagaactgttacacagtcaaaatgag
taccactag
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