Setaria italica (foxtail millet): 101773875
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Entry
101773875 CDS
T02818
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C
KO
K07466
replication factor A1
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03030
DNA replication
sita03420
Nucleotide excision repair
sita03430
Mismatch repair
sita03440
Homologous recombination
sita03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101773875
03420 Nucleotide excision repair
101773875
03430 Mismatch repair
101773875
03440 Homologous recombination
101773875
03460 Fanconi anemia pathway
101773875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sita03000
]
101773875
03032 DNA replication proteins [BR:
sita03032
]
101773875
03400 DNA repair and recombination proteins [BR:
sita03400
]
101773875
Transcription factors [BR:
sita03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
101773875
DNA replication proteins [BR:
sita03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
101773875
DNA repair and recombination proteins [BR:
sita03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
101773875
MMR (mismatch excision repair)
101773875
DSBR (double strand breaks repair)
HR (homologous recombination)
101773875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-CCHC
zf-CCHC_2
DUF223
CDC24_OB3
DUF936
BRCA-2_OB1
Fer4_9
Motif
Other DBs
NCBI-GeneID:
101773875
NCBI-ProteinID:
XP_004960524
UniProt:
A0A368QCF2
LinkDB
All DBs
Position
III:complement(4159325..4164080)
Genome browser
AA seq
1002 aa
AA seq
DB search
MAAPAQLTPGGVVAVSNHADGEGTLQPVLQVVDVRRVTQKNQNPSASERYRMVLSDGVHA
LQSMLATAENHHIRDGTIQKGSIIHLQEFTCSTIHNRRIIIIIKLEVLQSECDIIGNSKP
YEVNVPTEQPPNLLANAAQVNSGPYSSGPGVLGSSVAPRAAQVANNVNLPTEQPPNLLAN
AAQVNSGPYSSGPGMLGSSVAPRPAQIANNENLPTEHSPNFLANAAQVNSGPYSSGTVML
GSSVAPRAAQVANNVNLPTEQSPNFPANAAQVNSGLYSSGTGMLGSSVAPRAAQVANNVS
HGGSYGGYPGTVGPSIGRAVEPVPNVSSGGSYGFYGTASAHNTMHADMMQSNLQQPSLNS
HQNQRFAVPAMAGGSGTPGNTYGRPAQSFYQQPPPGHMNRGPVTKNEATRAAVPVAQLNP
YQERWTIKARVASKTDLRHFNNPRGPGKVFSFDLLDASGEIRATCFNAQADQFFDLIEVD
KVYLISRGSLKPAQKKFNPLNHEYEITVDFRTSIEVCPSDDSSIPRQQYNFRQISEIENI
EVGAIVDLVGIVTSVNPSATITRKDGSEAQKRTLQLKDMSGRSVEITFWGKFCDAEGQQL
QLQCDSGLNPVLALKSVRVTEFSGRSVSSISSTQLKINPDFPEAEKLQRWYVTEGKTATC
VSLSVASMGKTDVRKTVVQIKDENLGRSEKPDWITVKGTVSHLNTDNFCYPACTMEVNGR
QCNKKVINNGDGTWHCDRCDQSLPNCEYRYLLMCQIQDHTGLTYANAFQEAGVEIMGCSA
EELYNMKEEDTERFADIIQGVRWQQFLFKLKVYEETFNDEQRVKCSIVKAEKLDLSRECS
YLLKGIGALLQDDTGSPSEVQGAMAYSAGLNTSGAGQGMPASNSAYATSMGTPRYGETGN
QLGQQANTYGGVSTPLSATRNVETCMGCGSSGHNAQSCPASMYRQQQPAANTASSYVSSP
GDAGSGRCFRCNQPGHFANACPGVGAASGGYGRQPYVRATNY
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgccggcgcagctgacccccggcggggtggttgccgtctccaatcacgccgac
ggcgaggggacgctgcagccggtgctgcaggtggttgacgtgcggagggtcacccagaag
aaccagaaccccagcgcctccgagcgctaccggatggtgctctccgacggcgtccacgcg
ctgcagtccatgctcgctaccgccgagaaccaccacatccgggacggcaccatccagaag
ggctccatcatccacctccaggagttcacctgcagcaccatccataaccgcaggatcatt
attattatcaaacttgaagttctgcaaagtgagtgtgacataattggaaactcgaaaccc
tatgaggtaaatgtacctacagagcagccccccaacttactggccaatgctgctcaagtt
aatagcggaccatattccagtggcccaggcgtgctgggatcttctgttgctccaagggca
gctcaggttgctaataatgtaaaccttcctactgagcagccccctaacttactggccaat
gctgcacaagttaatagcggaccatattccagtggcccaggcatgctgggatcttctgtt
gctccaaggccagctcagattgctaataatgaaaaccttcctactgaacattcccccaac
ttcctggccaatgctgctcaagttaatagtggaccatattccagtggcacagtcatgctg
ggatcttctgttgctccaagggcagctcaggttgctaataatgtaaacctacctactgag
cagtcccccaatttcccagccaatgctgctcaagttaatagtggactatattccagtggc
acaggcatgctgggatcttcagttgctccaagggcagctcaggttgctaataatgtatca
catggtggatcttatggtggttatccgggtacggtgggcccttcaattggtcgggcagta
gaaccggttcccaatgtgtcatctggtggctcttatggtttttatggtacagcttcagca
cacaatacaatgcatgctgacatgatgcagtcaaacttgcagcagccttcactgaactct
caccagaaccaaaggtttgcagttcctgccatggctggtggcagtggtactcctggcaat
acttacggccgccctgcacagtccttttatcagcaaccacctccagggcatatgaataga
ggtcctgttaccaagaatgaagctacccgtgctgctgtcccagtggctcagttgaacccc
taccaagaaagatggacaatcaaggctagagtggcttcaaagactgatcttagacacttt
aacaatccgagaggtcctggaaaagtcttctcctttgatctccttgatgcaagtggagaa
atccgtgcaacatgcttcaatgcgcaggctgatcagttttttgacctaattgaggttgat
aaggtgtacctgatatctagagggtcgctgaaacctgcacagaaaaagtttaaccctttg
aatcatgagtacgaaataactgtggatttcagaacttctattgaagtttgccctagtgat
gatagcagcatccctaggcagcagtacaatttccggcagataagtgaaattgagaacatt
gaggttggtgctattgtggacttggttgggattgttacatcagttaacccttctgccaca
ataacgcgaaaggatggttcggaagcccagaaaagaactcttcaactgaaagacatgtct
ggtcgaagtgtagaaataaccttttgggggaaattctgtgatgctgaaggccagcagctg
cagttgcagtgtgattctggtttgaatcctgtactagctttgaaaagtgttcgtgttact
gaattcagtggtagatctgtgagctcaatcagctcaacccaattaaaaataaacccagac
tttcctgaggctgagaagctgcagcgctggtatgtaactgaaggaaagactgctacttgt
gtttctttgtcagtggcaagtatgggcaagactgatgtacggaaaacagttgtgcaaatc
aaggatgaaaatctggggcgatcagagaagccagactggatcactgttaaaggtacagtt
tcgcatttgaacactgataacttttgttaccctgcctgcaccatggaggtgaatggtagg
cagtgcaacaaaaaggtgataaataacggtgacgggacatggcattgtgacagatgcgac
cagagcttaccaaattgtgagtataggtacttactgatgtgtcagatccaggatcatact
gggctcacctatgctaacgcattccaagaggctggtgtggagataatgggctgcagcgcc
gaagagctttacaacatgaaagaagaagacacggaacgatttgcagatatcatacagggg
gttcgctggcagcagtttctattcaagctgaaagtctatgaggagacctttaatgacgag
cagcgcgtcaagtgcagcattgtgaaagctgagaagcttgatctgtcgagagagtgctct
taccttctgaaggggattggtgccctattgcaggatgatacgggctcaccttctgaggtg
caaggtgccatggcctatagtgctggtctcaatacctcgggcgctggacaaggcatgcca
gcctccaacagtgcctatgccacgagtatgggcactccaaggtatggggagaccgggaac
cagcttgggcagcaagcaaacacatacggtggggtgtccactccattatctgcgacacgg
aatgtggagacctgcatgggttgcgggtcaagtgggcacaatgcccagagctgtcctgca
agcatgtataggcagcagcagcctgctgcgaacacggctagctcctatgtctcttcacct
ggcgatgctggctctggtcggtgtttcagatgcaatcagcctgggcactttgccaacgct
tgccctggtgtgggtgctgcatcaggagggtatggtaggcagccctacgttagggctacg
aattactga
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