Setaria italica (foxtail millet): 101777343
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Entry
101777343 CDS
T02818
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03022
Basal transcription factors
sita03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101777343
09124 Replication and repair
03420 Nucleotide excision repair
101777343
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sita03021
]
101777343
03400 DNA repair and recombination proteins [BR:
sita03400
]
101777343
Transcription machinery [BR:
sita03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101777343
DNA repair and recombination proteins [BR:
sita03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101777343
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
101777343
NCBI-ProteinID:
XP_004972829
UniProt:
K3YGS8
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Position
VI:complement(4859858..4867994)
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AA seq
600 aa
AA seq
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MGSLTIGAKYKTTLKDPGTPGILRMNDDKFTFTPNDPRSAMKLNVEFRSIKGHKFNKVDG
NKPALLNLSKDSDKGGGYMFEFDNVGNRDLCRDFVARVLGKHQGMPPRPTMPPEISVPSA
GMEQLSAAEVERRVKLLREDSELQKLHKKFVLGNILQESEFWATRKNLLDDVANKASKQK
PGFKTAMSDVRPSADGRTNKVTFNLTPEMIHQIFAEKPAVRRAFLDFVPKKMTDLEFWRK
YCRAEYLLRTKNTAAAAAEAAEDEELAVFLKNDDILVKEAKLKIKQVDPTLDMEADAGDD
YIHLPDHGILRDGSKETVDNDSEFARRTLSQELNRHAAVVLEGIASDVELTDAKSVAEAL
ARSKKEPPSTSAVDDTSHERLLKVARMTEIEDLQAPRSLPYAPLCIKDPREYFDSQQANA
LRSLGASNDGRKSRNCSLSIEEAFHHLTDQISSIKVNKSNCTVIQSDMAVKVLNELNEGI
SRSRRLNLKNPQEGLLGRVPQHTRDELMDHWTAIQELLRHFWSSYPITSTVLYNKVQRVK
DAMTQIYQKLQAIKESAQPDVRHEISRLVKPMTQALDAAFSHDLEQQQKSAKAGNKSNGF
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgctgacgatcggagccaagtacaagaccactctcaaggaccccggcaccccg
gggatcctccgcatgaacgatgataagttcactttcaccccgaatgatcctaggtcggca
atgaagctaaatgtcgaattccgaagtatcaaaggtcacaagttcaacaaggtagatggt
aacaaaccagcattgttgaatctttcaaaagattctgacaagggtggaggctacatgttt
gagtttgacaatgttggtaaccgcgacctatgtcgagactttgtagctagggttttaggc
aaacatcaagggatgccccctcgaccaaccatgcctcctgaaatctcagttccatctgct
ggtatggaacagctgagtgctgctgaagtggagcgacgtgtgaaactgttgcgagaagat
agtgaattgcagaaattacataagaagtttgttcttggaaatattctgcaagaatctgaa
ttttgggcaacaagaaagaatttacttgatgatgtagcaaataaagcatcaaaacaaaag
cctggtttcaagactgcgatgtctgatgttaggccgtcagctgatggtcggacaaacaag
gttactttcaatctcacacctgagatgatacatcagatttttgctgaaaagcctgctgtt
cgtcgggcatttttagatttcgttccgaaaaagatgacagacctagaattttggagaaag
tactgtagagctgagtatctacttaggacaaaaaacactgcagcagcagcagctgaggct
gctgaagatgaggaattagccgtcttcctgaagaatgacgatatattggtgaaggaggca
aagttaaagataaaacaagtcgatccaacgttagacatggaggcagatgctggagatgat
tatatccatcttccggaccatgggattctccgtgatggcagcaaagagacagttgacaat
gacagtgagtttgccaggagaacactgtctcaggagctgaatcgccatgccgctgttgtt
cttgaagggatagcttcagatgtggagctgactgatgcaaagagtgtagcggaagccctt
gcaaggtccaagaaggaaccaccttccacttctgctgttgatgatactagtcatgagaga
ctgttgaaggtggccagaatgacagagatagaggatctgcaagctccacgaagccttccc
tatgcaccactttgtataaaggatccgagagagtattttgattcccaacaagcaaatgct
ctgagatctttaggtgcgagcaatgatggaagaaaatcccgtaattgcagcttgagcatt
gaagaagcgttccatcatttaacggatcaaatatcttcgattaaagttaataagtcgaac
tgtacagttattcagtcagatatggctgttaaggttcttaatgaattgaatgaagggatt
tcacgttcaaggagacttaacctcaagaatcctcaagagggtctccttggtcgggtgcct
caacatacgagggacgagcttatggatcattggacggctatccaggaattgctgcgccat
ttctggtcatcatatccaataacaagcacagtcctttataataaggttcaaagagtcaag
gacgcaatgacacagatatatcaaaagttgcaggcaataaaggaatcagcacagcctgat
gtaaggcatgaaatatctcggctagtaaagcccatgactcaggccttggacgctgccttc
agccatgatctggagcagcagcagaaatcggccaaggccgggaacaaatccaacgggttt
tga
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