Setaria italica (foxtail millet): 101777821
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Entry
101777821 CDS
T02818
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03040
Spliceosome
sita04141
Protein processing in endoplasmic reticulum
sita04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101777821
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
101777821
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
101777821
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sita01009
]
101777821
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sita03041
]
101777821
03009 Ribosome biogenesis [BR:
sita03009
]
101777821
03110 Chaperones and folding catalysts [BR:
sita03110
]
101777821
04131 Membrane trafficking [BR:
sita04131
]
101777821
03051 Proteasome [BR:
sita03051
]
101777821
03029 Mitochondrial biogenesis [BR:
sita03029
]
101777821
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sita04147
]
101777821
Protein phosphatases and associated proteins [BR:
sita01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
101777821
Spliceosome [BR:
sita03041
]
Complex B
Other components
Prp19 complex
101777821
Complex C
Prp19-CDC5 complex
101777821
Ribosome biogenesis [BR:
sita03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
101777821
Chaperones and folding catalysts [BR:
sita03110
]
Heat shock proteins
HSP70 / DNAK
101777821
Membrane trafficking [BR:
sita04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
101777821
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
101777821
Proteasome [BR:
sita03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
101777821
Mitochondrial biogenesis [BR:
sita03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
101777821
Exosome [BR:
sita04147
]
Exosomal proteins
Proteins found in most exosomes
101777821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
DACNG
Hydantoinase_A
Motif
Other DBs
NCBI-GeneID:
101777821
NCBI-ProteinID:
XP_004962705
UniProt:
K3Z4G5
LinkDB
All DBs
Position
III:complement(41234097..41238245)
Genome browser
AA seq
649 aa
AA seq
DB search
MAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPINTVFDAKRLIGRRFSDASVQSDIKLWPFKVISGPGEKPMIVVQHKGEEKQFAA
EEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVLRIINEP
TAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKNKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFY
STITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPRVQQLLQDFF
NGKELCKNINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLI
PRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQDAEKYKSEDEEHKK
KVESKNSLENYAYNMRNTIRDEKIASKLAADDKKKIEDAIDAAISWLDANQLAEADEFED
KMKELESLCNPIIAKMYQGAGADMGGAAGMDEDAPAGSGGPGPKIEEVD
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggcggggaagggcgacgggccggcgatcggcatcgacctcggcaccacctactcgtgt
gtcggcgtgtggcagcacgaccgcgtcgagatcatcgccaacgaccaggggaaccgcacc
accccctcgtacgtcgccttcaccgattccgagcgcctcatcggagatgccgccaagaac
caggtcgccatgaaccccatcaacaccgtctttgatgccaagcgtctcatcggcaggagg
ttcagtgatgcttctgtccagagtgatatcaagctctggcccttcaaggtcatttctgga
ccgggtgagaagcccatgattgttgtccagcacaagggtgaggagaagcagtttgctgct
gaagagatttcctctatggttctgatcaagatgcgtgagatcgctgaagcttaccttggc
agcaccatcaagaacgctgttgtcaccgttcctgcctacttcaacgactcacagaggcag
gccaccaaggatgctggggtgattgctggacttaacgttctgcgtatcatcaatgagcca
actgctgctgctattgcctatggtcttgacaagaaggctaccagtgttggtgagaagaat
gtcctcatctttgacctgggcggtggtacctttgatgtctccctcctcaccattgaggaa
ggtatctttgaggtgaaggccactgctggagacactcatcttggtggtgaggactttgac
aacaggatggtgaaccacttcgtccaggagttcaagaggaagaacaagaaggacatcact
ggcaacccgagggctctcaggaggctgaggaccgcctgtgagagggcgaagaggaccctg
tcttctactgcccagaccaccattgagattgactcgctgtacgagggcattgacttctac
tccaccatcacccgcgccaggttcgaggagctcaacatggacctgttcaggaagtgcatg
gagcctgtggagaagtgcctgagggatgccaagatggacaagagcactgtgcacgatgtt
gtccttgtcggtggctccaccaggattcccagggtgcagcagctgctccaggacttcttc
aacggcaaggagctgtgcaagaacatcaaccctgatgaggctgttgcctacggtgctgct
gtccaggctgccatcctgagcggtgagggcaatgagaaggtgcaggacctgcttctgttg
gatgtgacccctctgtcccttggtctggagactgccggaggtgtgatgactgtgctgatc
ccgaggaacacaaccatccccaccaagaaggagcaggtgttctccacctactcggacaac
cagcctggtgtgctgatccaggtgtacgagggtgagaggaccaggacccgcgacaacaac
ctcctgggcaagttcgagctctccggcatcccccctgctccccgtggtgtcccccagatc
actgtctgcttcgacatcgatgccaacggcatcctgaacgtctctgccgaggacaagacc
actggccagaagaacaagatcaccatcaccaacgacaagggccgtctgtccaaggaggag
atcgagaagatggtgcaggacgctgagaagtacaagtcggaggacgaggagcacaagaag
aaggtggagtccaagaactctctggagaactacgcctacaacatgcgcaacacgatccgc
gacgagaagatcgcgtccaagctggcggcggacgacaagaagaagatcgaggacgccatc
gacgctgccatcagctggctggacgccaaccagctcgccgaggcggacgagttcgaggac
aagatgaaggagctggagagcctgtgcaaccccatcatcgccaagatgtaccagggcgcg
ggagcggacatgggcggcgccgcgggaatggacgaggacgcgcctgcgggaagcggcggc
cccggccccaagatcgaggaggtcgactaa
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integrated database retrieval system
