Setaria italica (foxtail millet): 101777845
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Entry
101777845 CDS
T02818
Name
(RefSeq) THO complex subunit 4D isoform X1
KO
K12881
THO complex subunit 4
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03013
Nucleocytoplasmic transport
sita03015
mRNA surveillance pathway
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101777845
09122 Translation
03013 Nucleocytoplasmic transport
101777845
03015 mRNA surveillance pathway
101777845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101777845
03041 Spliceosome [BR:
sita03041
]
101777845
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101777845
TREX complex
101777845
Spliceosome [BR:
sita03041
]
Complex C
Other components
EJC/TREX
101777845
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101777845
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
RRM_10
YHR127W_C
GRP0
Motif
Other DBs
NCBI-GeneID:
101777845
NCBI-ProteinID:
XP_004965165
UniProt:
A0A368QT52
LinkDB
All DBs
Position
IV:complement(10697630..10702788)
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AA seq
306 aa
AA seq
DB search
MATSLDVPLDDLIKSRNGRGRGRGRGQGGGRGRGDGQRLARGSWRGRGTGTFRGRGLGVP
SRRPLGVNTRSSSFAIAKSFNKAKDFVWRHDLFEDSMVAAGLSGIESGTKLYISNLHYGV
TREDIKELFSEMGHLKHCAVHYDNNRHPTGSAEVIFTRRSEALAALKRYNNVRLDGKAMK
IEVIGADLGLSAAATPRISVVPGARGRGQREVVMMYGPGGNGFGRGTAGSSNSLPGWKRG
GFAQRGGGQVRGGFTQRGGRQVRGRGRSSFGRGRGRGYVRKGNVEKSADQLDKELDNYHS
GAMNVD
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggcaacatctttggacgttccactcgatgatttgattaagagcagaaatgggagggga
aggggaagaggcaggggacaaggagggggtcgaggcagaggtgatggtcaaagattggcc
cgtggatcatggcgtgggcgtggtactggcaccttccgtggaaggggacttggggtgcct
tcacgaaggccacttggtgttaatactcgatcctcatcgtttgctattgccaagtcattc
aataaagcaaaggattttgtgtggaggcatgatctgtttgaggatagcatggtggcagct
gggctttctgggatagaatctggtacaaagttgtacatttcaaacttgcactatggggtg
accagggaagatataaaggagcttttttcagaaatgggtcatttgaagcactgtgctgtt
cactatgacaataatagacacccaactggttctgctgaggtgatattcaccaggagaagc
gaagctcttgcggcactgaaacgatataataatgtgcgccttgatgggaaggcgatgaag
attgaagtgataggagcagatttgggtctttctgctgctgccacaccccggattagtgtt
gttcctggtgcaaggggaagaggacagagagaagttgtaatgatgtatgggcctggtggg
aatgggtttggtcgaggtacagctggctcatctaattcacttcccgggtggaagcgtgga
ggttttgctcaaagagggggaggacaagtgcgcgggggttttactcaaagagggggaaga
caagttcgcgggcgtgggcgtagtagctttggcaggggccgtggacgtggctatgtgcgc
aagggaaatgttgagaaatcagccgaccaattggacaaggagcttgacaactaccattct
ggtgcgatgaatgttgactaa
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integrated database retrieval system
