Setaria italica (foxtail millet): 101778158
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Entry
101778158 CDS
T02818
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101778158
09123 Folding, sorting and degradation
03018 RNA degradation
101778158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101778158
03041 Spliceosome [BR:
sita03041
]
101778158
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101778158
mRNA degradation factors
5'-3' decay
Lsm complex
101778158
Spliceosome [BR:
sita03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
101778158
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
101778158
NCBI-ProteinID:
XP_004952559
LinkDB
All DBs
Position
I:complement(24267191..24269597)
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AA seq
97 aa
AA seq
DB search
MSSGGGSDKSGSGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQ
TEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLTDGS
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcggcggcggcagcgacaagtccggctcgggcggcggcggggcggtgaagacg
ccgtcggacttcctcaagtccatcaggggccggcccgtcgtcgtcaagctcaactccggc
gtcgactaccgaggtattctggcttgtcttgatggatacatgaacatcgcaatggagcaa
actgaagagtatgtgaatggtcagctaaagaacaaatacggtgacgctttcataagagga
aacaatgtattgtacatcagtacatccaagcgtacccttaccgacggttcttga
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integrated database retrieval system
