Setaria italica (foxtail millet): 101778212
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Entry
101778212 CDS
T02818
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101778212
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101778212
03041 Spliceosome [BR:
sita03041
]
101778212
03009 Ribosome biogenesis [BR:
sita03009
]
101778212
03016 Transfer RNA biogenesis [BR:
sita03016
]
101778212
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101778212
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101778212
Spliceosome [BR:
sita03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101778212
Complex C
U4/U6.U5 tri-SnRNP related factors
101778212
Ribosome biogenesis [BR:
sita03009
]
Eukaryotic type
Pre-60S particles
Helicases
101778212
Transfer RNA biogenesis [BR:
sita03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101778212
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
101778212
NCBI-ProteinID:
XP_004978840
UniProt:
K3ZH39
LinkDB
All DBs
Position
VIII:complement(4746156..4752904)
Genome browser
AA seq
1008 aa
AA seq
DB search
MGEEAENISKRKAPDSSGVEDPSPPAPASTAQSQAEADPAAKRRNTSRSCIHEVAVPKSY
EAAKDEAVHGTLANPEFNGEMAKQYPFKLDPFQSVSIACLERNESVLVSAHTSAGKTVVA
EYAIAMAFRDKQRVIYTSPLKALSNQKYRELSQEFTDVGLMTGDVTLQPNATCLVMTTEI
LRAMLYRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATE
FAEWICSLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDESGQFREDNFGKLQDSFS
KQNNQLDGRRGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHH
AMSMSKLDFNTEDEKECIEQVFHNAIGCLVEEDRSLPAIELMLPLLKRGIAVHHSGLLPI
IKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIGSGEYIQMSG
RAGRRGKDERGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYSILNLMSRVEGQFT
AEHVIRHSFHQFQYEKALPEIVQKITRLEDEATLLDSSGEIDLAEYHKLGLDISELEKKI
MSEMIRPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPASGTLPPALSASRSNSYI
VDTLLHCSSSSNENGSRSKPCPPRPGEKGEMHVVPVPLPLISGLSSVRINIPPDLRPPEA
RQNILFAVQELGKRYPQGLPKLHPINDMGIQEPELVDLVHKLEELEQKQCSHRLHKSGQS
EQELSWYQRKADLNSEIQQLKSKMRDSQLQKFRDELRNRSRVLKMLGHIDADGVLQLKGR
AACLIDTGDELLITELMFNGTFNDLDHHQVASLASCFVPCDKSSEQIRLRNELSGPMMQL
QEAARKIAEVQRECKLEVNVEEYVESTCRPYLMDVIYCWSRGATFAEVMEMTDIFEGSVI
RLARRLDEFLNQLRAAAEAVGEVNLEEKFKKASESLRRGIMFSNSLYL
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagaggcagagaacatcagcaagcgcaaggcgccggactcgagcggggtggag
gatccgagcccgccggcgccggcgtcgacggcgcaatcgcaggcggaggcggacccggcg
gccaagcgccggaacacctcccggtcgtgcatccacgaggtcgctgtcccgaagagctac
gaggcggccaaggacgaggcggtgcacgggacgctggcgaacccggagttcaacggggag
atggccaagcagtacccgttcaagctagaccccttccagagcgtctccatcgcgtgcctg
gagaggaacgagtcggtgctcgtctccgcgcacacctccgcggggaagaccgtcgtcgcc
gagtacgccatcgccatggcgttccgggacaagcagagggtcatctacacctccccgctc
aaggccctgagcaaccagaagtacagggagctcagccaggagttcacagatgtcgggctg
atgacaggcgatgtcacgctccagccaaatgccacgtgcctggtcatgactaccgagatc
ctcagggccatgctctacaggggctctgaggtgatcaaggaggttgcttgggttatattc
gatgagattcattacatgaaggatcgcgagagaggagtcgtgtgggaggagagtataatt
ttcctgccccctgccatcaagatggtctttctgtccgctaccatgtcgaacgcgaccgag
tttgcggagtggatatgcagtctgcacaagcagccctgtcacgttgtgtatacggacttc
aggccgacaccgttgcagcactatgtgtttccaattggtggttctggtctctaccttgta
gtagatgaaagcgggcagttcagagaggataactttgggaagctacaggactcatttagt
aagcaaaataatcaattagatggaaggagaggtggtggacctaaagcgagtggtcgaatt
gcaaaaggtggaagcgcctctgggaattctgacatatacagaattgtcaagatgatcatg
gagcggaagtttcaaccagtcataattttcagctttagtagaagagaatgtgagcaccat
gccatgtctatgtcaaaacttgacttcaacactgaagatgaaaaggaatgcatcgagcaa
gttttccataatgctattggttgtttagtcgaagaagatagaagtttacctgctatagag
ttgatgttgccgcttcttaaacgaggcattgcagtacaccattctggactacttcccata
atcaaagagctggtggaattgctctttcaagaaggccttgtgaaagctctctttgctact
gagacatttgccatgggtcttaatatgcctgcaaaaacggttgttttcacatctgtcaaa
aaatgggatggtgatactaaccgctatattggttctggagaatatatacagatgagtgga
agagctggccggcgtggcaaggatgaacgtggcatttgtgttataatgatagatgagaag
atggaaatgagtgttatcaaggacatggtgttaggcaaaccggcacctcttgtcagtact
ttccggctgagctattacagtattctgaacttgatgagccgtgtggagggccaatttacc
gcagaacatgtgattaggcattcattccatcagtttcagtatgagaaggcattgccagaa
atagttcaaaagatcactcggttggaggatgaagcaaccttgcttgactcctcaggagag
attgatcttgctgaatatcacaaattgggccttgatatatctgaacttgagaagaaaata
atgtctgagatgattagaccagagagggctttgttatatttggttcctggaaggctggtt
aaagtgagggatggttcaaccgactggggatggggtgtggttgtaaatgtagtgaagaaa
cctccagcatctgggactcttccccctgcattaagtgcatcacgcagcaatagctatata
gtggataccttgcttcactgctcttctagttccaatgagaatggatcacgttcaaagcca
tgcccgcctcgcccaggggagaagggtgaaatgcatgtggtacctgtaccattgccttta
atatctggtctaagcagtgttagaatcaacattcctccggatctgcgaccacctgaagca
aggcaaaatatactttttgcagtgcaagaactaggaaagcgctacccccaaggccttccg
aagctacatccaataaatgacatgggtattcaagaacctgagctagtagacttggttcat
aaacttgaggaacttgaacagaaacaatgttctcaccgacttcataagtctggtcaaagt
gagcaggaactatcatggtaccaaagaaaagcagatttgaatagtgaaattcagcaattg
aagtcaaagatgcgggattcacagctacaaaaattcagagatgaacttaggaaccggtca
cgcgttctgaagatgcttggtcatattgatgctgatggcgttctccagctaaagggacgt
gctgcctgtttaatagacacaggggatgagctgcttatcactgaacttatgttcaatggt
acatttaatgatctcgatcatcatcaagttgcttcccttgctagctgctttgtaccttgc
gataaatcaagtgagcaaatacgcctaagaaatgaactttctgggccgatgatgcaactt
caggaggctgcgagaaaaatagctgaggtacaacgagaatgcaaattagaagtaaatgtg
gaggaatatgttgaatcaacctgcagaccctacctgatggatgtcatatactgctggtcg
aggggagccacctttgcagaggtgatggaaatgaccgacatttttgaaggaagtgtcata
aggcttgccagaaggctggatgaatttctgaatcagttgagagccgcggctgaagccgtt
ggggaggttaaccttgaggagaagtttaagaaggcgagcgagagcttgcgtcggggcatc
atgttttccaactcattgtatctgtaa
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