Setaria italica (foxtail millet): 101778221
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Entry
101778221 CDS
T02818
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101778221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sita03041
]
101778221
03009 Ribosome biogenesis [BR:
sita03009
]
101778221
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101778221
Spliceosome [BR:
sita03041
]
Complex A
U1 snRNP components
U1 related factors
101778221
Complex B
101778221
Ribosome biogenesis [BR:
sita03009
]
Eukaryotic type
Pre-60S particles
Helicases
101778221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
101778221
NCBI-ProteinID:
XP_004980010
UniProt:
A0A368SB39
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All DBs
Position
VIII:39325657..39332852
Genome browser
AA seq
1357 aa
AA seq
DB search
MAAQEAAADALGPRFAPDDPTLPAPWKALIDGATLYYWNPETNVTQYEKPGAAAAAPPLP
AGPPPTIPAQVPEPAPGAFSQPGMQFGQAGQGAHQERPGQATYPQAGQLGQQQQQQTQQP
AQQQPFQHVPQQQPSFQQALYQQQQPHMPNQPPQYPNPHPQHMPYQQGPYNMQPQQQQQG
PPYPYQADKQPQMPQPAYHQTQQPPMPQAAYNQGQQPPMPQSSYSQGQQPVIPQSAYNQA
QPPQMPHGAYNQSQQPQGMRIPQNQVQHPQQSMSFHHPAQAPQLPQVSQSQGLQMPPQQG
QLLHGLQFSQHGKQPLSHGQQSPLLKDDDSGGHEGKRTGFSLPLSQQRGQAPISNQQLPS
SHQHPGAVNQPNVPGVGGPLYPAKHLHGGSSPAETNNMGFMNSPAQMHQGAVDTNYRQQP
VSSHAVPNHVGPSPVRPLMGFEMGNSDGHFERDDPHSYGRFDGANALQQQPKLAAIPPSQ
NPLQGMRNGPPYPRPDNFGGYNMAPPHPVPNPHNHGPLPIGASMRPPSTMFAPPDFTGIP
SADAYRQHHEVTAMGENVPAPFMTFEATGFPPEILREIHAAGFSNPTPIQAQTWPVALQN
RDIVAIAKTGSGKTLGYLIPAFIHLRRCQNNPMLGPTVLVLAPTRELASQIQDEVVKFGR
SSRVSCTCLYGGASKGPQLRELERGADIVVATPGRLNDILEMKKISLHQVSLLVLDEADR
MLDMGFEPQIRKIVDEIPPARQTLMYTATWPKEVTKIAGDLLRDPVQVNIGSIDELVANK
SITQYVEVVPPMDKQRRLEQILRDQERGSKIIIFCSTKKMCDQLARGIGRSFNAVSIHGD
KSQAERDNVLNQFRTGRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGR
AGATGVSYTFISEQDWKHAGDLVKLLEGANQHVPPQLLDMAARGATGGPRNQATGMSRWD
GPGGGRFEPAVGGPVGYGGVREGPGGFGSREGPGVFSSLEGPGGFGGRESPGGFAGREGP
DGFGGRDGFGGREGPGGFGGREGPGGFGGRKGPGGFGGRDGPGSSGFGGRGGRGSGGRGG
ASPGGFGGRGGRGDSPGFGGRGRGDFSGFGGRGRGDSPGFGGRGRGDFSGGRGGRGRGFG
GRGRSDRGPHDRYVSDGRGRYDNRRGFGDKDRDRSYSRSPDRGRSRGYDRRSDSRSLSRS
RSRSRSWSRSRSRSRSWSRSRSRSGSHSRSRSRSRDHGAAPERRPRARSGFDVLPPATGA
AGPALTGPAPVPVPGSAIPPVPSLPHAQSLTDTSAMSPMSPGGLVQPAAAPLNGMNDGNF
SGPHAGQPFHGTDAAIPSFPAAETFPGSVAQQAAPDV
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcggctcaggaggccgccgcagatgcattgggccctcggtttgcccctgatgacccg
actctccctgcgccctggaaagcgctgatcgacggggcaacgctgtactactggaacccg
gagacgaatgtgacccagtatgagaagccgggtgctgcggcggcagcaccccccttgccg
gcgggtcctccgccaacgatccctgcgcaggttccggaacccgcaccaggggctttttca
cagcctggcatgcagtttggccaagctggtcagggggcgcaccaggagcgaccaggacag
gcaacttatcctcaggctggccagcttgggcagcagcagcagcagcagactcaacagcca
gcgcagcagcaaccttttcagcacgtgcctcaacagcaaccttcgtttcagcaagcgctg
tatcagcaacagcagccacacatgccaaatcagccacctcaataccccaacccgcatcct
caacacatgccgtaccagcagggtccttacaacatgcaaccccagcagcaacagcaagga
ccgccatatccgtatcaggcagacaagcagccacaaatgccgcaacctgcctaccatcaa
acacagcagccaccgatgccacaagctgcctacaatcaaggtcagcagccaccgatgccg
caatcttcctacagtcaaggtcagcagcccgtgataccacaatctgcctacaatcaggct
caaccgccgcaaatgccacacggtgcatataaccaaagccagcagccgcaaggaatgagg
attcctcaaaatcaagtgcaacaccctcaacaatctatgagctttcaccaccctgcccag
gctccacagttaccgcaagtttctcaatctcaaggacttcaaatgccccctcaacaaggc
caactgctgcatggattgcagttctctcagcatggaaaacagccactgtcacatgggcaa
caaagtccattgttgaaggatgatgattcaggaggtcatgaaggcaagaggactggcttt
tcattaccacttagtcagcagcgtggccaagctcctatttcaaaccagcagttaccttct
agtcatcaacatccaggagctgttaatcagccaaatgtacctggagtcggtgggccattg
tatcctgcaaagcatcttcatggtggatcatctccggccgagactaataacatgggtttt
atgaactcacctgctcaaatgcatcaaggtgcagtggatacgaactaccggcaacaaccg
gttagcagccatgcagttccaaatcatgttggtccatcaccagttcgtcctctgatgggt
ttcgagatgggtaatagtgatggtcactttgaaagggatgatcctcactcctatggaagg
tttgatggagcaaatgctctccagcagcagccaaagcttgctgctattccgccttcacaa
aatcccctgcagggcatgcgaaatggcccgccttatcctcggccagacaattttggtggt
tataacatggcacctccacatccagtgccaaatccacataatcacggtccattgccgatt
ggagcttctatgagaccgccatcaacaatgtttgctcccccagatttcacaggcatacct
tcagctgatgcataccgtcagcaccatgaagtcactgctatgggtgagaatgttcctgct
ccatttatgacttttgaggctactggattccctccagagatcctgagagagatccacgca
gctggcttttcaaatcccactccaattcaagctcaaacatggcctgttgcactgcaaaac
cgggacatagtagctattgccaagacagggtctggaaagacactggggtacctaattccg
gcttttatacatttgaggagatgccaaaacaatccgatgttgggtcctacagtgttggtt
ttagcccctactcgtgagcttgcttcacaaatacaagatgaagtagtcaagtttggtcga
tcatctagagtctcctgcacatgcctatatggtggtgcttcaaagggtcctcagctaaga
gaacttgagcgtggagcagatattgtggtagcaacaccaggacgtcttaatgatattctg
gagatgaagaagattagcctccatcaggtttcattacttgtgcttgatgaggctgaccgt
atgcttgacatgggttttgagccacagatacggaagattgtggatgagattcctcctgct
agacagactctgatgtatactgccacatggcccaaggaggttacaaaaatagcaggggat
ttactcagagatcctgtccaggtcaacattggcagcattgatgaacttgttgccaacaaa
tcaatcactcagtatgtggaggtggttccacctatggacaagcagcgacgcctagagcag
atcctgagagatcaagaaaggggttcaaaaatcatcatattctgctcaactaagaaaatg
tgtgaccaacttgctcgtggcattggtcgcagttttaatgctgtaagcattcatggtgat
aaatcacaggctgaaagagataatgttctcaatcagtttcgaactggcagggctccaata
ttggtagccacagatgttgctgctcgtggacttgatatcaaagatatcagagtggtaatc
aattatgactttccaactgggatagaggactatgtgcatcgtatagggcgtacaggaaga
gctggggcaactggagtctcatacacattcatctctgaacaagattggaaacatgctggt
gatttggtgaaactcttggaaggtgctaaccagcatgttcctccacagctgctggacatg
gctgcacgaggtgctactggaggtccaagaaaccaggctactggaatgagtcgctgggat
gggcctggtggtggtcgttttgaaccagctgttggtggccctgttggttatggtggagtt
agggagggccctggaggctttggcagtcgtgagggccctggagtcttcagcagtcttgag
ggcccaggcggatttggtggtcgagaaagcccaggcgggtttgctggcagggaaggccct
gatggatttggcggacgggatggttttggtgggcgggagggtcctggtggctttggtgga
agggagggtcctggtggcttcggtggcagaaagggcccaggtggctttggcggacgggat
ggccctgggtccagtggttttggaggtagaggggggcgtgggtctggtggtagaggcgga
gcaagccctggtggctttggtggtcgtggtggcaggggtgattctcctggttttggtggg
cgtggcaggggtgatttttcaggttttggtgggcgtggtaggggtgattctcccggtttt
ggtggacgaggtaggggagatttctctggtggacgtggtggcaggggccgtggatttggc
gggaggggacgttctgaccgaggtccacatgaccggtatgtctcagatggccggggaaga
tatgataaccgtcgaggatttggcgacaaggatagggaccggagctacagccgcagcccg
gatagaggcagatcacgaggctatgacagaagaagtgatagcaggagccttagtaggagc
agaagccgcagcaggagctggtcacgtagtaggagccgcagcaggagctggagccgtagt
cggagccgcagcggcagtcatagtcgcagcaggagcaggagccgtgaccatggtgcagca
ccagaacgcaggccccgagcaaggtccggattcgatgtgctgccaccagcaactggagca
gctggacctgctttaaccggacctgcacctgtccctgtacctggatcagcaataccccct
gttccttcacttccacatgcacaatcactcactgatacatctgcaatgtcgccaatgtca
cccggtggactggtccagccggctgctgcaccattaaacggcatgaatgatggtaacttc
agcggtccacatgctggtcaacctttccatgggactgacgctgcaatacccagttttcct
gccgccgaaacatttccaggctctgtagctcagcaggcagctcctgatgtgtaa
DBGET
integrated database retrieval system
