Setaria italica (foxtail millet): 101778906
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Entry
101778906 CDS
T02818
Name
(RefSeq) LOW QUALITY PROTEIN: cellulose synthase-like protein D4
KO
K00770
1,4-beta-D-xylan synthase [EC:
2.4.2.24
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita00520
Amino sugar and nucleotide sugar metabolism
sita01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00520 Amino sugar and nucleotide sugar metabolism
101778906
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
sita01003
]
101778906
Enzymes [BR:
sita01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.2 Pentosyltransferases
2.4.2.24 1,4-beta-D-xylan synthase
101778906
Glycosyltransferases [BR:
sita01003
]
Polysaccharide
Structural polysaccharide
101778906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cellulose_synt
zf-RING_4
Glyco_trans_2_3
Glyco_tranf_2_3
zf-UDP
Motif
Other DBs
NCBI-GeneID:
101778906
NCBI-ProteinID:
XP_004962788
LinkDB
All DBs
Position
III:43243842..43248329
Genome browser
AA seq
1228 aa
AA seq
DB search
MSRRLSLPAGSQVTVTVSPTRGGKAVESPGGGDAVVKRGAGGIGITSPAPRHSLGGAGSS
SATLQLSPVRRSGGSRYASRDGGGGVDESAEFVHYTVHIPPTPERAVAASADSVDAPAPA
ASEEGAGADEVRAQRSFISGTIFTGGLNQATRGHVLNNTSGTGGAAAAASANMSCKMRGC
DMPAFLTSGAGGGPCDCGFMICRECYVDCVNGAGNCPXCKEPYSAGSDTDDGGEDDDEAV
SSSEERDQLPLTSMAKRFSLVHSMKFPSGNAGCAAGVGGGGKPAEFDHARWLFETKGTYG
YGNALWPKDGGHGGGATGFAGFEEPPNFGSRCRRPLTRKTSVSQAIISPYRLLIAIRLVA
LGFFLTWRIRHPNPEAVWLWAMSVTCEVWFAFSWLLDSLPKLCPVQRAADLDVLAERFEL
PTARNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGAL
LTFEALAETASFARTWVPFCRKHGVEPRSPEAYFGQKRDFLKNKVRVDFVRERRKVKREY
DEFKVRVNSLPEAIRRRSDAYNAGEELRARRRQQEEAMAAGTLPGALPEAAAIVKATWMS
DGSHWPGTWLNAAPDHSRGDHAGIIQAMLAPPTSEPVLGGEPAESGGLIDTTGVDIRLPM
LAYVSREKRPGYDHNKKAGAMNALVRTSAIMSNGPFILNLDCDHYVHNSAALREGMCFML
DRGGDRICYVQFPQRFEGIDPNDRYANHNLVFFDVAMRAMDGLQGPMYVGTGCVFRRTAL
YGFSPPRATEHHGWLGRKKIKLFLRKPTMGKKTDRESDNDKEMMLPPIEDDGFKQLDDIE
SSALLPRRFGSSATFVASIPVAEYQGRLLQDTPGAHQGRPAGALAVPREPLDAATVAEAI
SVISCFYEDKTEWGRRIGWIYGSVTEDVVTGYRMHNRGWRSVYCVTRRDAFRGTAPINLT
DRLHQVLRWATGSVEIFFSRNNALFASPRMKLLQRVAYFNVGMYPFTSIFLLVYCVLPAI
SLFSGKFIVQSLNVTFLALLLIITVTLCLLAVLEIKWSGITLHEWWRNEQFWVIGGTSAH
PAAVLQGLLKVIAGVDISFTLTSKPGTGDDGEEDAFAELYEVRWSFLMVPPVTIMMVNAV
AVAVASARTLYSEFPQWSKLLGGAFFSFWVLCHLYPFAKGLLGRRGRVPTIVFVWSGLIS
MTISLLWVYINPPAGAKERIGGGGFSFP
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggcggctgtcgctgccggcggggtcgcaggtcacggtaacggtgtcgccgacg
aggggcggcaaggcggtggagagccccggcggcggcgatgcggtggtgaagaggggcgcc
ggcgggatcgggatcaccagcccggcgccgcggcactcgctcgggggcgcggggtcgtcg
tccgccacgctgcagctctcgcccgtgcgccggagcggggggagccggtacgcgtcgcgg
gacggcggcggcggcgtcgacgagagcgccgagttcgtgcactacaccgtgcacatcccg
cccacgccggagcgggccgtggcggcgtccgcggactccgtcgacgcgccggcgccagcg
gcgtcggaggagggcgccggcgcagatgaggtgcgggcgcagaggagcttcatctccggc
accatcttcaccggcgggctcaaccaggccacgcgcggccacgtgctcaacaacacctcc
ggcaccggcggcgcggcggcggcggcgtccgcgaacatgtcgtgcaagatgcgcggctgc
gacatgccggcgttcctcacctccggcgccggcgggggcccgtgcgactgcgggttcatg
atctgccgcgagtgctacgtggactgcgtcaacggcgccggcaactgccccngctgcaag
gaaccctactccgccgggagcgacaccgacgacggcggcgaggacgacgacgaggccgtc
tcctcctccgaggagcgggaccagctgccgctcacgtccatggcgaagcgcttctccctc
gtgcactcgatgaagttccccagcggcaacgctggctgcgccgccggcgtcggcggcggc
ggcaagcccgcggagttcgaccacgcccgctggctcttcgagaccaagggcacctacggc
tacggcaacgcgctctggcccaaggacggcggccacggcggtggcgccactggcttcgcc
ggcttcgaggagccgcccaacttcggctcccgctgccgccgcccgctcaccaggaagacc
agcgtctcgcaggccatcatcagcccgtacaggctactcatcgccatccgcctggtggcg
ctggggttcttcctgacatggcgcatccggcacccgaacccggaggcggtgtggctgtgg
gcgatgtcggtgacgtgcgaggtgtggttcgccttctcctggctcctcgacagcctcccc
aagctctgccccgtccagcgggccgccgacctggacgtcctcgccgagcgcttcgagctc
cccaccgcgcgcaaccccaaaggccgctccgacctccccggcatcgacgtcttcgtctcc
accgccgacccggagaaggagccgccgctcgtcaccgccaacaccatcctctccatcctc
gccgccgactaccccgtcgagaagctcgcctgctacctctccgacgacggcggcgcgctg
ctcaccttcgaggcactcgccgagaccgccagcttcgcgcgcacctgggtgcccttctgc
cgcaagcacggcgtcgagccgcgcagccccgaggcgtacttcggccagaagagggacttc
ctcaagaacaaggtgcgcgtggacttcgtcagggagcgccggaaggtgaagcgcgagtac
gacgagttcaaggtgcgggtgaattcgctgccggaggccatccgccggcgctccgatgcg
tacaacgccggcgaggagctgcgcgcccggagaaggcagcaggaggaggccatggcggcc
ggcacccttcctggagcgttgcccgaggcagcggcgatcgtgaaggcgacatggatgtcc
gacggctcgcactggcctggcacatggctcaacgccgcgccggaccactcccgcggtgac
cacgctggcatcattcaggcaatgcttgcgcctccgacatcagagccggtgctgggcggg
gagccagcagagtccggcgggctgatcgacacgacgggcgtggacatccggctgccgatg
ctggcgtacgtgtcccgcgagaagcggccggggtacgaccacaacaagaaggctggcgcc
atgaacgctcttgtgcgcacgagcgccatcatgtccaacgggcccttcatcctcaacctc
gactgcgaccactacgtgcacaactcggcggcgctccgggaggggatgtgcttcatgctg
gaccgcggcggcgaccgcatctgctacgtccagttcccgcagcggttcgagggcatcgac
cccaacgaccggtatgccaaccacaacctcgtcttcttcgacgttgccatgcgcgccatg
gacgggctgcagggccccatgtacgtcggcactggctgtgtcttccgccgcaccgcgctg
tacgggttcagcccgcctcgcgccaccgagcaccacggctggctcgggaggaagaagatc
aagttgttcctgaggaagcccaccatggggaagaagaccgacagagagagcgacaacgac
aaggagatgatgctgccgccgatcgaggacgacggcttcaagcagctcgacgacatcgag
tcctcggcgctgctcccgcggcggttcggcagctcggcgacgttcgtggcgtccatcccc
gttgcagagtaccagggccggctcctgcaggacactcccggcgcgcaccaaggccgcccc
gccggcgccctggccgtgccccgcgagccgctggacgccgccaccgtcgccgaggccatc
agcgtcatctcttgcttctacgaggacaagacggagtggggccggcgcatcggctggatc
tacggctccgtcaccgaggacgtggtcaccggctaccggatgcacaaccgtgggtggcgt
tccgtgtactgcgtgacgcggcgcgacgcgttccgcggcacggcgccaatcaacctcacc
gaccgcctccaccaggtgctccggtgggcgacggggtccgtggagatcttcttctcccgc
aacaacgccctgttcgcgtccccgcggatgaagctcctccagcgcgtcgcctacttcaac
gtcggcatgtacccgttcacctccatcttcctcctcgtctactgcgtgctcccggccatc
tccctcttctccggcaagttcatcgtgcagtccctcaacgtcaccttcctcgcgctcctg
ctcatcatcactgtgacgctctgcctgctggccgtgctggagatcaagtggtccgggatc
acgctgcacgagtggtggcgcaacgagcagttctgggtgatcggcgggaccagcgcgcac
ccggccgccgtgctgcagggcctcctcaaggtgattgccggcgtggacatctccttcacg
ctgacgtccaagcccggcaccggcgacgacggcgaggaggacgccttcgcggagctgtac
gaggtgcggtggagcttcctgatggtgccgcccgtgacgatcatgatggtgaacgcggtg
gccgtggcggtggcgtcggcgcgcacgctgtacagcgagttcccgcagtggagcaagctg
ctgggcggcgccttcttcagcttctgggtgctgtgccacctctacccgttcgccaagggc
cttctcggccggcgtggccgtgtgccgaccatcgtgttcgtctggtcggggctcatctcc
atgaccatctcgctgctctgggtctacatcaacccgcctgccggcgccaaggagcgcatt
ggtggcggcggattcagcttcccgtag
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