KEGG   Setaria italica (foxtail millet): 101779222
Entry
101779222         CDS       T02818                                 
Name
(RefSeq) protein transport protein SEC13 homolog B
  KO
K14004  protein transport protein SEC13
Organism
sita  Setaria italica (foxtail millet)
Pathway
sita03013  Nucleocytoplasmic transport
sita04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:sita00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    101779222
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    101779222
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sita03019]
    101779222
   04131 Membrane trafficking [BR:sita04131]
    101779222
Messenger RNA biogenesis [BR:sita03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     101779222
Membrane trafficking [BR:sita04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    101779222
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    101779222
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    101779222
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_IFT122_1st Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR3_2nd Beta-prop_RIG_2nd Beta-prop_Vps41 ANAPC4_WD40 WDR55 Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st WD40_Gbeta Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_IFT140_1st EIF3I Beta-prop_EIPR1 NBCH_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_HPS5 Beta-prop_WDR36-Utp21_2nd Beta-prop_NOL10_N Beta-prop_WDR41 WD40_RFWD3 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 101779222
NCBI-ProteinID: XP_004968630
UniProt: K3XKD9
LinkDB
Position
V:complement(13517940..13520646)
AA seq 305 aa
MPPHKIETGHQDVVHDIAMDYYGKRLATASSDNTIKIIGVSGASHQQLATLSGHQGPVWQ
VAWAHPKFGSMLASCSYDGRVIIWKEGSKPDEWAQAHTFVEHKSSVNSIAWAPHELGLSL
ACGSSDGNISVFTARSDGGWDTTRIDQAHPVGVTSVSWAPSMAPGALISAGPSGQYEYVQ
KLASGGCDNTVKVWKLTNGSWRMDCFPALQMHKDWVRDVAWAPNLGLPKSTMASASQDGT
VVIWTAAKEGEQWEGRVLYDFRTPVWRLSWSLTGNILAVSDGNNNVTLWKEAVDGEWQQV
TTVEP
NT seq 918 nt   +upstreamnt  +downstreamnt
atgccgcctcataagattgagaccgggcatcaagatgtggtgcatgatatcgccatggat
tactatgggaagcgtcttgctacagcctcctctgacaacacgataaagatcattggcgta
agtggcgcctcgcatcagcagcttgcaactttgagtggacaccagggcccagtttggcaa
gtcgcatgggctcatcctaagtttggttccatgcttgcatcctgcagctatgatggccgg
gttatcatctggaaagagggtagcaaacccgatgaatgggcacaggcacacacctttgtt
gagcacaagtcctctgtgaattccattgcatgggcgcctcatgagctgggtctaagcttg
gcgtgtggttcatctgatgggaacatttcagtcttcactgctcgttctgatggaggttgg
gacacaacacgcattgatcaggcgcatccagtgggagtgacctcagtctcttgggctcct
tcgatggcacctggtgctctaatcagtgcaggaccttctggccagtatgaatatgttcag
aaactcgcgtctggtggctgcgacaacacagtcaaggtgtggaagctcaccaatggaagt
tggaggatggattgtttccccgcactacagatgcacaaggactgggtgagggacgtcgcg
tgggcgccaaaccttggcctcccaaagtccaccatggccagcgcctctcaggatggtacc
gtggttatctggacagcagcgaaagaaggcgagcagtgggaaggcagggtcctgtatgat
ttcagaacccctgtgtggaggctgtcatggtcgttgacagggaatatacttgctgtgtcc
gacggtaacaacaatgtgaccctgtggaaggaagctgtggatggtgaatggcagcaggtt
accactgttgagccatag

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