Setaria italica (foxtail millet): 101779223
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Entry
101779223 CDS
T02818
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03013
Nucleocytoplasmic transport
sita03015
mRNA surveillance pathway
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101779223
09122 Translation
03013 Nucleocytoplasmic transport
101779223
03015 mRNA surveillance pathway
101779223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101779223
03041 Spliceosome [BR:
sita03041
]
101779223
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101779223
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101779223
Spliceosome [BR:
sita03041
]
Complex C
Other components
EJC/TREX
101779223
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101779223
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
101779223
NCBI-ProteinID:
XP_004968948
UniProt:
K3XGQ9
LinkDB
All DBs
Position
V:complement(25344811..25350192)
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AA seq
512 aa
AA seq
DB search
MDGGCPHVSVASTASGSSRLSKSSRSVSPASCRLSLRTPDANRPASCRVLFLCLLRLALE
SATQADSTATRRFSSPPSPRSRGMMVEAKDNEVYEEDLVDYEEEVENVADGAPTNGSADV
VKKGYVGIHSSGFRDFLLKPELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMG
KTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSKYLPELRVAVFYGGVNI
KNHKDLLKNECPHIVVGTPGRILALARDKDLPLKNVRHFILDECDKMLESLDMRRDVQEI
FKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEK
NRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFK
EGHKRILVATDLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSA
SDSDVLNQVQERFEVDIKELPEQIDTSTYMPS
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggacggtggatgcccgcacgtctccgtcgcatccacggcatcgggttcctctcgcctc
tcaaaatcctcgcggtccgtgtcacctgcgtcgtgtcgtctctcgcttcgcacgcccgac
gcaaatcgccccgcgtcgtgtcgtgtcctcttcctctgccttcttcggctcgcgctcgaa
tccgcaacccaagccgattccaccgcgacccgccggttctcttctcctccgtccccgaga
tctcgaggcatgatggtggaggcgaaggacaacgaggtgtacgaggaggacctcgtcgac
tacgaggaggaggtagagaatgtcgccgacggcgcccccaccaacggctccgccgatgtc
gtcaagaaggggtacgtggggatccacagctcggggttcagagacttcctgctcaagccg
gagcttctccgtgccatccaggactgcggatttgagcatccttccgaagtgcaacatgaa
tgcatccctcaagccattcttggaatggatgtcatctgtcaagcaaaatctgggatgggt
aagactgcggttttcgttctctcaactcttcagcagattgatcctgttgctggccaagta
gctgcgcttgtgttatgccacacaagagagttagcttaccagatttgccatgaatttgag
aggtttagcaaatacctgcctgaattaagagtcgctgtcttctatggtggagttaacata
aagaatcacaaggatctattgaagaatgaatgcccgcatattgtggttggcacacctgga
aggatacttgctctagctagagataaggaccttccgttgaagaacgtgaggcatttcatt
cttgatgaatgcgacaagatgcttgaatcacttgacatgcgtagagatgtccaggagatc
ttcaaaatgactccccatgataagcaagtgatgatgttttcagcaaccctcagcaaggaa
attcgtccagtttgcaagaaattcatgcaagatcctatggaaatttatgttgatgacgag
gctaaactgacccttcatggtctagttcagcactacatcaaattaagtgaggcagagaag
aatcgaaagttgaatgatctcttagatgcgctcgatttcaatcaagttgtgatatttgtc
aaaagtgttagtagagctgcagagctgaacaagttgctctgtgagtgcaatttcccctca
atctgcatacattctggaatgacacaggaagagaggttgacccgatacaagaacttcaag
gaaggacacaagaggattcttgtggctaccgatttggttggtaggggaattgatattgag
cgtgtcaacattgtcgtaaactatgatatgccagattctgctgatacctacttgcatagg
gttggtcgggctggccgttttggcactaagggacttgcaataacctttgtttcttctgca
tctgattctgatgttctcaatcaagtgcaagaaaggtttgaggttgacataaaggagctg
cctgagcagatagacacttcaacatacatgccatcttga
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