Setaria italica (foxtail millet): 101779579
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Entry
101779579 CDS
T02818
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sita
Setaria italica (foxtail millet)
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101779579
03041 Spliceosome [BR:
sita03041
]
101779579
03036 Chromosome and associated proteins [BR:
sita03036
]
101779579
Enzymes [BR:
sita01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101779579
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101779579
mRNA cycle factors
Common to processing body (P body) and stress granule
101779579
Spliceosome [BR:
sita03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
101779579
Chromosome and associated proteins [BR:
sita03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
101779579
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101779579
NCBI-ProteinID:
XP_004981371
UniProt:
K4A6Y6
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All DBs
Position
IX:complement(2738006..2743336)
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AA seq
640 aa
AA seq
DB search
MRSSWADSVANAEESVPATVTATAPAVNHQSGRPTLSAYVPPHLRGRSAGPSSEIQAVPA
AAPAPAEVRSAAVQPSGYASVVVGGSRWSGPTGGGGSSAIVGPRQGGGGGGGGRGGGGGW
NSRPGWDRRDREPNPFANTEASDVDFEAQENTGINFDAYEDIPVETSGHDVPPPVNTFAE
IDLGDALNENIRRCKYVKPTPVQRHAIPIAIGGRDLMACAQTGSGKTAAFCFPIISGILK
SRPPQRQRGSRTACPLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPIHQQLRE
LERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVDQMDMPP
RGVRQTMLFSATFPKEIQRLASDFLADYIFLAVGRVGSSTDLIAQRVEFVLEADKRSYLM
DLLHAQKANAAHGKQALTLVFVETKRGADALEDWLYKNGFPATSIHGDRTQQEREYALRS
FKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN
EGNLSLAKPLCELMQEANQEVPQWLERYAARSSYGGGGGRNRRSGGARFGGRDFRRDRDF
RGGGGGGGYGGGGGYGGGGYGGGGGGYGGSYGGGATSSWD
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgcgatcttcatgggctgattcagttgcgaacgccgaggaatcggtgcccgcgactgtt
actgctactgcccctgctgttaatcatcagagcgggcgccccaccctcagtgcatacgtc
cctccccacctccgtggtcgctcagctggtccttcctctgagatccaggcagtgcctgct
gcagctccagcaccagctgaggtacggtcagctgctgtgcagccttcaggctacgcatct
gttgttgttggtggctctcgttggtctggccctactggtggtggtggtagcagcgccata
gttggtcctcgccagggtggtgggggtgggggtggtggtcgaggtggcggtggcggttgg
aactctcgccctgggtgggaccgtagagaccgcgaaccaaacccttttgccaatactgag
gcttcagatgttgattttgaggctcaagagaacacgggcatcaactttgacgcctatgag
gatattcccgtggagacaagtggccatgatgtccctccaccagtcaacacctttgcagag
attgatctgggtgacgcacttaatgagaacatacgaaggtgcaagtatgtgaagccaaca
cctgtgcagcgacatgccattcctatcgccattggaggtagggacctcatggcttgtgca
cagacagggtctggaaagactgcagcattctgttttcccatcatcagtggtatcttgaag
tcaaggccaccccagaggcaaaggggttccagaacagcttgtccgctggctctgatattg
tcccctactcgtgagctatctatgcaaattcatgaagaagcaaggaagttttcataccaa
actggtgttagggtggttgttgcatatggtggagcaccaatacaccagcagctgagggaa
ctggaaagaggtgttgaaatccttgtggcaactcctggtcgtttgatggatctgctggag
agagctagagtatcactgcaaatgataaagtacttagctctcgatgaagctgatcgaatg
ctcgatatggggtttgagccacagatacgcaagatcgttgaccagatggatatgcctcct
cgtggtgtgaggcagactatgctgtttagtgccacctttccaaaagaaatccagcgtctg
gcttcagatttccttgctgactacatcttccttgctgttggaagagttggttccagtact
gatttgattgctcagagggtcgagtttgtacttgaggcggacaaaaggagttacctgatg
gaccttcttcatgcacaaaaagctaatgctgctcatggaaagcaagctcttactttggtc
tttgtggagacaaagaggggagctgatgctctcgaggactggttgtataaaaacggtttt
cctgcaacaagtattcatggtgacaggacacagcaggaaagagagtatgcattgaggtcc
ttcaagagtggagcgactcctatacttgttgcaactgatgtggctgctcgtggacttgac
ataccacatgttgctcatgtcatcaattttgacctcccaaatgacatagatgactatgtt
catcgtattgggaggacaggacgagcggggaaatctggtctggcaactgcctttttcaac
gagggcaacttatcactggcaaagccactatgtgagctgatgcaggaagctaaccaggag
gttcctcagtggcttgagcgttatgcagcccgttcttcctatggaggtggtgggggaaga
aaccgccgatcaggcggtgctagatttggtggccgtgacttccgccgtgaccgggacttc
aggggaggaggtggtggtggaggttatggtggcggcggcggttacggtggtggaggttat
ggtggcggtggcggcggatatggtggcagctatggtggaggtgcaactagttcctgggac
taa
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