Setaria italica (foxtail millet): 101780563
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Entry
101780563 CDS
T02818
Name
(RefSeq) flowering time control protein FY
KO
K15542
polyadenylation factor subunit 2
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101780563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101780563
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101780563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
eIF2A
NBCH_WD40
WDR54
Motif
Other DBs
NCBI-GeneID:
101780563
NCBI-ProteinID:
XP_004951823
UniProt:
K3YQF3
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Position
I:7438122..7444502
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AA seq
704 aa
AA seq
DB search
MMQQQQQQLPPPPQHQPPQGGGGGEFYRGPPMRQLSAASSTNLTPEYPAHPGPPQQQQHQ
PPYDAYGDNFGAKRMRKPVQRRTVDYTSSVVRYVQARMWQRDARDRFTLQPTPAAVLDML
PSVAYPDNPSTSYAAKFVHSSINKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF
EMILQAHDQPVRSMVWSHNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRGLSFSR
TDLKFCSCSDDRTVKVWDFARCQEEKSLTGHGWDVKTVDWHPTKSLLVSGGKDYLVKLWD
AKSGRELNSFHGHKNIVHCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHTKDVT
ALAWHPFHEEYFVSGSFDGAIFHWLVGHEAPQIEINNAHDNSVWDLAWHPVGYLLCSGGN
DHATKFWCRNRPGDITRDRYNSGQTQGYVDQHPAFGARAMGGFQMPEPPTPGPFAPGLSR
NEGTIPGIGVAMTLDGSDQGEQRPSIPGLPPGQPPLPPGPHPSQLLGQQQQYQQMPQQQH
SQFRPPPPNMPQLQPPAHMLSHSQGSRPTLPQLPPMGGPSMPSPVNPPLPPMPHPTAMQG
SQNQMMPQMPQHMMGLNQMHPGSVPPGNVPPMGGFPSAMGNIQGASGSSGIQNFPMGGIY
NRPQGQMAPQGQMTSIPGLSSYQGMGNVGLTQPPPPPQHPPPRG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagcagcaacagcagcagctgccacctccgccgcagcaccagccgccccagggc
ggcggcggcggggagttctaccgcggaccgccgatgcggcagctatcggcggcgtcctcc
accaacctcacccctgagtacccggcgcacccgggtcccccgcagcagcagcagcatcag
ccgccatacgacgcttatggtgacaattttggtgctaaaaggatgcggaagcctgtccag
cgacgaacagtggactacacaagcagtgttgtccgttatgttcaagctcgcatgtggcag
cgggacgcgagggacagattcacattacagccaactcctgctgctgtcctagatatgtta
ccatctgttgcttatccggataatccttccacaagttatgctgccaaatttgtgcattct
tcaatcaataagaaccggtgctctatcaatcgtgtcttgtggacccctacaggccgtcgg
cttatcactggatcacaaagtggtgaatttacgctatggaatggacaatcttttaatttt
gaaatgatacttcaggctcatgatcaacctgtgagatcaatggtttggagtcacaatgaa
aactggatggttacgggtgatgatggtggcgcaatcaagtattggcaaagtaacatgaac
aatgtcaaagtgaataaaacagctcacagagaatcggttcgtggtttaagcttttctaga
acagacttgaagttctgctcctgctccgatgacagaaccgttaaggtttgggactttgca
agatgccaagaggaaaaatcattgactggccacggttgggatgttaaaactgtcgattgg
catcctacaaagtctttattggtttcaggtggtaaagactatcttgtgaaactctgggat
gcaaaaagtgggagagagctaaactcattccatggtcataaaaacattgtgcattgtgta
aagtggaatcagaatgggaactgggtactgactgcctcaaaggatcagattatcaagctg
tatgatataagatccatgaaagagcttgagtccttccgtgggcacaccaaggatgttact
gcgttggcatggcatccatttcatgaagaatattttgttagcgggagctttgatggagca
atatttcattggttggtcggccatgaagctccacagatcgaaataaacaatgcacatgac
aatagtgtgtgggatcttgcctggcatcctgtaggctatctactttgcagtgggggcaat
gatcatgctacaaagttctggtgtagaaacaggcctggtgatattacccgtgatagatac
aacagtggccagacacaaggttatgttgaccaacatcctgcttttggtgctcgtgctatg
ggtggattccagatgcctgaacctccaacacctggaccatttgctcctggattgtcacgt
aatgaaggcacaatccctggcattggggttgcaatgaccttggatggatctgatcaagga
gagcagagaccatctattccaggtcttccacctgggcaaccccctctgccacccggtcct
catccatcacaacttcttgggcagcagcaacaataccaacagatgcctcagcagcaacat
tcccagtttcggccgccacctccaaatatgccccaattgcagccaccagctcacatgctt
tcacattcgcaaggatctcgtccgacacttccccagcttccaccgatgggcggaccatca
atgccatcaccagtgaatccaccacttccaccaatgcctcacccaacggcaatgcaaggt
tcacagaaccagatgatgccccaaatgccacagcacatgatgggcctaaatcagatgcat
cctggttctgttcctcctggcaatgtacctccaatgggtgggttcccaagtgcgatggga
aacatccaaggagcatcaggttcatctggcatacaaaattttcctatgggtggcatctac
aaccgacctcagggacaaatggctccacaaggacaaatgacatccattccaggtctaagc
tcttaccagggaatgggcaatgttggccttacacaacccccaccaccaccacagcaccca
ccacctcgtggttga
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