Setaria italica (foxtail millet): 101780585
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Entry
101780585 CDS
T02818
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101780585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101780585
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
101780585
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
101780585
NCBI-ProteinID:
XP_004973377
UniProt:
K3YJK6
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Position
VI:complement(24740944..24742861)
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AA seq
223 aa
AA seq
DB search
MGLEMEAAAAPAPAAAGEQGLEIYPLSRYYFGAKDAAGAPRGVETAADRALRLKANFAAH
GLRTSVHGVLLVELFGHPHVLLLQVRNSSFVLPGGRLRPGEEELQGLKRKLSSKLSILDE
SEGDAEDEDEDDWQVGECIGMWWRSEFEAIPFPYMPPNFRMPKECIKLFLIRLPMSRQFI
VPRNMKLLAVPLSQIHNNAQVYGPVISGIPNLLSKFALNVISD
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atggggctcgagatggaggcggcggctgctcctgcgcctgcggcggcgggggagcagggg
ctggagatatacccgctcagccgctactacttcggcgccaaggacgccgccggcgcgccc
cgcggcgtggagacggccgccgaccgcgcgctccggctcaaggccaacttcgccgcccac
gggctccgcaccagcgtccatggcgtcctcctggtggagctgttcggtcacccgcacgtg
ctgctgctgcaggtccggaactcctccttcgtgctccccggaggccgcctcaggcccggc
gaggaagagctccaagggctcaagcgcaaactctcaagcaagctgtccatccttgatgaa
agcgaaggcgatgctgaggatgaggatgaggatgactggcaggttggggagtgcattggg
atgtggtggagatctgaatttgaggccatcccgtttccatacatgccaccaaacttccgc
atgccaaaggaatgcatcaagctgttcctgatcaggctgccgatgtcccggcagttcatc
gtgcccaggaacatgaagctgctggccgtgcctctgtcccagattcataacaacgctcag
gtttatggtccggtcatatctgggattccaaatctactgtccaagttcgcgttgaacgtt
atcagtgactga
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