Setaria italica (foxtail millet): 101780952
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Entry
101780952 CDS
T02818
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101780952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101780952
Enzymes [BR:
sita01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
101780952
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101780952
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101780952
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
CATASP
IG_AIR9
Motif
Other DBs
NCBI-GeneID:
101780952
NCBI-ProteinID:
XP_022685534
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Position
IX:complement(55376318..55383140)
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AA seq
626 aa
AA seq
DB search
MTQVKPAPGGRMLTVLRVHLPSEIPIVGCEITPYVLVRRPDGGILTDDVSEASPVDGYFM
RYKWYRIQSDRRAAVCSLHPTEQATLQCIGCLKSKIPVAKSYHCSAKCFSDAWQHHRVLH
ERAISALNENGTEEEELFGKFGSGSSSSGIISAALSGSTPNLSQSSGVNNGPTPVYPTGT
EKSSGETWFEVGRSRTYTATADDIGHVLRFECVVVDLETRGTVRAPTSVMTSRVIPAPTP
TPRRLIPVNAADAMGHFDLDNRTTSFGTFTVLSYNILADTYATSDTYSYCPTWALSWAYR
RQNLLREIIGYHADIICLQEVQNNHFEEFFAPELDKHGYQALYKKRTTEVYAGSPQAIDG
CATFFRRDRFSHVKKYEVEFNKAAQSLTDAIIPAAQKKLALTRLVKDNIALIAVLEAKFG
NNGTENPSKRQLLCVVSASLLLGLALLITSMLLLKTIKFLPLGTERIGEIAVSADIPMLV
CGDFNSIPGSTSHGLLAMGKVDQLHPDLGVDPLGILRPPSKLTHQLPLVSAYSSFARMAS
VGYDLDHQRRRMDPTTNEPLFTNCTRDFTGTIDYIFYTADSLTVESLLELLDEDSLRKDT
ALPSPEWSSDHIALLAEFRCKPRVRR
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggtgaagcccgcccctgggggaaggatgctgaccgtgctgcgtgtgcacctc
ccgtcggagatcccgatcgttggatgtgagatcacgccgtacgtgctcgtgcggcgcccc
gacggcggcatcttgaccgacgacgtgtctgaggcctctcccgttgatgggtacttcatg
cgctacaagtggtaccgcatacaaagtgatcgaagagccgctgtctgcagcttacaccca
acagaacaagcaacgcttcagtgtatagggtgtctgaaatcaaaaattcctgttgctaag
agctaccattgttctgctaagtgcttctctgatgcctggcaacaccacagggttctgcac
gaacgtgctattagtgctttaaatgaaaatggaacagaagaggaggagttatttggcaaa
tttggcagtggcagttcgagttcagggattattagtgctgcgttgtctggttcaacacca
aatctttcgcagagttcaggtgttaataatggacctacacctgtgtatccaacaggcact
gaaaagagttccggtgaaacttggttcgaagtgggacgctcacgaacatatacagcaact
gctgatgatattgggcatgtattaagatttgaatgtgtagttgtggatttggaaacaagg
gggactgtgcgagctcctacttcggtcatgacatcccgtgtgatcccagcaccaaccccc
actccacgtcgcttgatccctgtgaatgctgctgatgcaatggggcattttgatttagat
aaccgaaccacttcgtttgggacatttactgtgctgtcctacaatattctcgctgataca
tacgcaacaagtgatacatacagctattgtccaacttgggcactttcatgggcttacaga
agacaaaatttactgcgtgaaattattggttaccatgctgatattatctgtcttcaggag
gtacaaaataatcactttgaagaattttttgcaccagagcttgataaacatggatatcaa
gcactttataaaaaaaggacaacggaggtgtacgcaggaagtcctcaagcaattgatggt
tgtgctacttttttccgaagggacagattttctcatgtcaaaaaatatgaggttgagttt
aataaggctgcgcagtctttaactgatgctattattcctgctgcccaaaagaagttggct
ctaactcgtttggttaaggataatattgcgttaattgctgttttagaagctaaatttggt
aacaatgggactgaaaatcctagtaaaagacagcttctttgtgttgtaagtgcttcctta
ttattggggttagcattgttaataacatctatgctgcttttgaagacgatcaaatttctt
ccattaggcactgaaaggattggagaaatagctgtcagtgcggatattcctatgttggtc
tgtggagattttaattcaatccctggaagtacatcacatgggcttcttgctatgggcaaa
gttgatcaattgcatccagatctgggggtagatcctcttggaattttgcgcccaccaagc
aaactgacacaccagcttcctctggtcagtgcatactcatcttttgcgaggatggctagt
gttggttatgatttggatcaccagcgaaggaggatggaccccacgacaaatgagccattg
ttcacaaattgcacgagggatttcactggtaccatcgattacatattttacacagctgat
tcattgacagtggagtcgttactggaactgttggacgaggatagcttgagaaaagacaca
gctcttccttcccctgaatggtcatcggatcatatcgcactcctagcagaattccggtgc
aagccgagagttagacgataa
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