Setaria italica (foxtail millet): 101783697
Help
Entry
101783697 CDS
T02818
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101783697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sita03021
]
101783697
03041 Spliceosome [BR:
sita03041
]
101783697
03036 Chromosome and associated proteins [BR:
sita03036
]
101783697
Transcription machinery [BR:
sita03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
101783697
Spliceosome [BR:
sita03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101783697
Complex B
101783697
Complex C
U2 SnRNP specific factors
101783697
Chromosome and associated proteins [BR:
sita03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
101783697
TFTC complex
101783697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
101783697
NCBI-ProteinID:
XP_004955774
UniProt:
A0A368PX36
LinkDB
All DBs
Position
II:complement(6467485..6478132)
Genome browser
AA seq
1360 aa
AA seq
DB search
METSTTGGASASSAAASSSSGPSTSASASGSAAGATHYLAKRVLRGSAVLHVAEGCFRSP
DSADVVLAKETSLELVAVGDDGVLQSICEQDMFGIVKDIGVLQWHSRHIGLIPQIEHKDL
LVVLSDSGKLSLLYFCPEMHRFFAIANIELSKPGNLRHQLGRVLAIDRESSFVAVSAYED
KFALIQVSVCQSLHGSGRGTISDKKYFYPPENEEDERTVSGASRTSVRGTIWNMRFISTS
QDEEYYPVLAMIINRKGSDVNDLSLFGHDSSSGVINHISSYSEIGPLALDISEIPEMFGF
ALLFRVGDALLLDLRNPRNVCCVRRISLTTSLIGEPVTVEDSCSVLDVDDDVAACALLEL
RDSANNILKDDGYMDIDGVDSRGSVKSRIVCSWSWEPPDPIKQGWARLLFCLDDGEFHIL
EFTADVEGVKLCTFEYIDRSLPCKPLLWMKNRMIIGFVEMGDGIIFKLGHRRLFHKSTIQ
NVAPILDLAIADYHGEKQDQMFACCGMCPEGSLRVLRNGVNVEKLLRTEAIYQGVTGLWT
LRMKITDAYHSFLVLSFVEETRILSVGISFNDISDAVGFQPDVCTLACGLVADGLLVQIH
SKGVKLCLPTVYAHPEGAHFTSPICTNWYPDVTISVGAVGHNVVVVATSNPCCLYVLGVR
SSSSYQYELYETQHVQLQFEVSCISIPQEDWRPDNVTLSGGERDDFCNNPLAKVNIRKFA
VIGTHKPSVEIISVEPGEALRLLTIGTISVSNALGAPISGCIPENVRFVAAERFYILAGL
RNGMLLRFESEASEHYFPGSFYKDSSIPSVDTFLQLISIRRIGITPVFLVPIHDSANADI
IVLSDRPWLLHAARHSLAYSSISFLPASHVTPVSSADCPNGLLFVAESCLHLVEMVHGKR
LNAQKFSIGGTPRKVLYHNESRTLLVLRTGLSGASCSSDIVQVDPQNGVLLSRYKCEPGE
TAKCMQITKIGSDQVLIVGTSRSAGRPMMSNGEAESSTKGRLIILSLEAVESPRESSSFI
PTSSFNPSSHSGSPFHEIIGYTTEEFSSNSLCSSPDEFCCNQIQAEQMAGHLRSLTHASL
SGAVLAVYPYLDRYVLAAAGNTIYVFGFANENPHRMKKCAVGRTRFTITCLKTFASRIAV
GDCRDGVLFYSYNESLRKLELIYSDPAQRLVGDIALLNCETAVVSDRRGSISVLSSARLE
VSESPQKNLAVNCSFYMGETAMSIQKAAFRYRLPIDDDTDPVLETAYDCIVASTLLGSLF
VMIPLTSEEHQLLQDVQERLAVHPLTAPVLGNDHAEFRQRSIPSGVPPILDGDMLVLFLE
LTGEQQQAILSHALPGKGPRAPVSVFQVLRTLERVHYALN
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atggagacctccaccaccggcggcgcctccgcctcgtcggcggcggcgtcgtcctcctcg
ggcccctccacctccgcgtccgcgtccggttccgccgccggcgccacccactacctcgcc
aagcgggtgctccggggcagcgccgtgctccacgtcgccgaggggtgcttccgctcgccc
gactccgccgacgtcgtcctcgccaaggaaacttcgctagagttggttgctgttggtgat
gatggtgttttgcagtcaatctgtgaacaagacatgtttgggattgtaaaagatattggt
gtcttgcaatggcactccagacatattggtttaattccacagatagaacacaaagatctt
ctggttgtgctttcagattctggaaagctttcccttctttacttttgccctgagatgcat
aggttctttgcaattgccaatattgagttatccaaaccaggaaatctgaggcatcagctg
ggaagagttttagctatagatcgagaatctagttttgttgctgtcagtgcatatgaggat
aagtttgctcttatacaagtttcagtgtgtcagagtcttcatggttctggcagaggtacc
atttctgataagaaatatttttatccaccagaaaatgaagaggatgaaagaactgtaagt
ggtgcatctaggaccagcgtccgcggtacgatttggaacatgcgcttcatatctacatcc
caagatgaagagtactatccagttctggcaatgataattaataggaagggctctgatgtg
aatgacttgtcattatttggacatgactccagcagtggtgtaatcaaccacatctctagt
tattcagaaatcggaccattggcacttgacatatcagaaattcctgaaatgtttggcttt
gcacttctgtttcgtgttggtgatgctttattgttggatcttagaaacccaaggaacgtc
tgttgtgtccgaagaattagcttgacgactagcctgattggagagccagtcaccgttgaa
gattcctgttcagtattagacgttgatgacgatgtggctgcttgtgctttgctagaattg
agagattctgcaaataacatactgaaggatgacggttatatggacattgatggtgttgac
agcagaggtagcgtgaaatcaaggatcgtttgctcatggagctgggagccacctgaccct
atcaaacaaggatgggcaaggcttctattttgcttagatgatggagagtttcatattttg
gagtttactgccgatgttgaaggagtgaagttgtgcacctttgagtatattgataggagt
ttgccctgcaaacctcttttgtggatgaaaaatagaatgataataggatttgtagagatg
ggggatggtataatatttaaacttggacatcgtagattgtttcacaaaagcacaattcag
aatgtagcaccaatattggatctagcgattgctgattaccatggtgagaaacaggatcag
atgtttgcatgttgtggtatgtgccctgagggctctttgcgagttctacggaatggtgtc
aatgtggagaaacttctgaggaccgaagctatttatcagggtgttactggattgtggact
ttgagaatgaagataactgatgcttatcactcttttcttgtgttatcatttgtggaggaa
accagaatactatcagtagggataagttttaacgacatcagtgatgccgtgggattccag
cctgatgtttgcactttggcatgtggtttggtggctgatggtttgctcgtgcaaattcac
agtaaaggtgtaaagctctgtttgcctacagtatatgctcaccctgaaggtgcccatttc
acttctccaatttgcaccaactggtatcctgatgttactatcagtgttggtgctgtagga
cataatgttgttgttgttgctacatcaaatccttgttgcctttatgtccttggagttaga
tcatcttcgtcttaccagtacgagttgtatgagacacagcacgttcaattgcaatttgaa
gtatcgtgcatatccatcccgcaagaggattggagacctgataatgtaactttaagtggt
ggagagcgtgatgatttttgtaacaatcccttggctaaagttaatatccgcaagtttgct
gttattggaactcataaaccttctgtggaaatcatctccgtggaacctggagaagcatta
aggttattgactattgggactatatcagtgagcaatgcacttggtgctccaattagtggt
tgtatacctgaaaatgtgagatttgttgcggctgagaggttttacatccttgcaggcttg
cgaaatggaatgctactaagatttgagtcggaagcaagcgagcattattttcctggttcc
ttctacaaggactcttctatcccatctgttgatacatttcttcagttgatttctatacgg
cgtattggaattactcctgtattcttggtaccaatacatgattcagccaatgctgatatc
attgttctcagtgataggccttggctattacatgcggcaagacatagtctggcatattca
tccatttcttttcttcctgcttctcatgtgacgccagtatcatctgctgattgccccaat
ggtctactgtttgttgctgagagctgtttgcatttggttgaaatggttcatgggaagcga
ttgaatgcacaaaagttttcaattggggggactccaaggaaagtgctataccataatgaa
agcagaacactgttggtactaagaactgggctaagtggtgcatcatgttcttcagatatt
gttcaagtagatccacaaaatggggtattgctttccagatataaatgtgaacctggtgaa
acagcaaagtgcatgcaaattacaaaaataggaagtgatcaagttttaattgtcgggacc
agtagatctgctggacggccaatgatgtcaaatggtgaagcagaaagcagtaccaaggga
cgcctgattattttaagcttggaggctgttgaaagtcctcgtgagagcagttcatttatt
ccaacttccagttttaatccctcttcacattctggctctcctttccatgagattattgga
tatacaacagaagaattttctagtaacagcctgtgcagcagtcctgatgagttttgctgc
aaccagattcaagctgaacaaatggcaggacatttgagatcgttaactcatgcttccttg
agtggtgcagtccttgccgtgtacccatatctagatcgttatgtgttggcagctgctggt
aatacgatttatgtatttggtttcgcaaatgaaaatccccataggatgaaaaagtgtgct
gttggtagaacacggtttacaataacctgtttgaagacatttgcatcacggattgcagtt
ggtgattgtcgtgatggtgttctattctattcttataatgagagtcttaggaaactggag
ttgatctattctgatcctgctcaaagattggtgggtgatattgctcttttaaattgtgaa
actgctgtcgtatcagaccggcgtgggagtatatctgtattatctagcgcaagattggaa
gtttcagaaagtccacagaagaacttagctgtaaattgttcattttatatgggcgaaaca
gctatgagcattcagaaggctgcattcaggtatcggcttccaattgatgatgatactgac
ccggttcttgagacggcttatgactgtatcgtggcaagtaccttgctggggagtctcttt
gttatgattccgcttacaagtgaggaacatcagctgttgcaagatgtccaagaaaggctc
gcggtgcacccgttgactgcaccagtcttgggaaatgatcatgcagaatttcgtcagcgc
agtatcccatcaggagtacctcccattcttgatggcgatatgctagtgctattcttggag
ctcactggtgagcagcagcaagccatcctttcacatgctttgcctgggaaggggccacgt
gcgcctgtctcggttttccaggttttgcgaacattggagcgtgtccattatgcactcaac
tga
DBGET
integrated database retrieval system
