Setaria italica (foxtail millet): 101784876
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Entry
101784876 CDS
T02818
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a isoform X1
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
101784876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sita04121
]
101784876
03036 Chromosome and associated proteins [BR:
sita03036
]
101784876
Enzymes [BR:
sita01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101784876
Ubiquitin system [BR:
sita04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101784876
Chromosome and associated proteins [BR:
sita03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
101784876
Noncanonical PRC1 (PRC1.1)
101784876
Noncanonical PRC1 (PRC1.3/1.5)
101784876
Noncanonical PRC1 (PRC1.6)
101784876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
zf-C3HC4_4
zf-RING_4
zf-RING_6
zf-UDP
zf-rbx1
zf-Nse
TRAF3_RING
zf-RING_11
zf-C3HC4_5
zf-RING_10
ZNF512_C2HC
Motif
Other DBs
NCBI-GeneID:
101784876
NCBI-ProteinID:
XP_004970249
UniProt:
K3XH87
LinkDB
All DBs
Position
V:complement(39115740..39123396)
Genome browser
AA seq
481 aa
AA seq
DB search
MPAQKRRLPSASSRPRDYVAAPGSDAATSGGGGGVGEGRGGRPPLPSGGAAKRRLTEPKP
QRGLEDDSDAEDGGGADGDSESSQSDGGGNDEFMLVKLAEIRKEVQCPICLGIIRKTRTV
MECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALITALYPDIDKYEEEE
LAFSEQEKTRNKKIQETIEETFRRQSEAIGKKRSTAKATATAFARKYRRNMQTRGRGRTV
TPDIAPTGSDDEDIQEENANEVTKEPSSADDHSPDLRQRRCRKRSASQASPARTIGSSDQ
SVEENEVVGGKEILATSPLRGEMLAWGKNGTRSQNRHGSASSNGRIGRSGRIAKLVDHLR
TTDEMDKEFHLYLVLLPINGQSTPNLEKPYLSCRPTLSIQHLVKLIAPQLSRKDEELEMY
IRMDRHNGSVGSKASSTGEAEPRPFDGLERLRGDKLLSDLHPSFASSNGDLELLYALKSG
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgcagaagcgccggctcccatcggcctcctcgagaccccgcgactacgtcgcg
gctcccggctctgacgccgccacctccggcggcggcggaggcgtaggagaaggaagagga
ggacgcccgccgctgccgagcgggggcgccgccaagcggaggttgaccgagccaaagccg
cagcgcggactcgaagacgattcggacgcggaggatggcggcggcgcggacggcgacagc
gagtcctcgcagagcgacggcggcggcaacgacgagtttatgcttgtgaaattagcagag
atacggaaggaggtacagtgccctatctgtttaggcattatccggaagacaaggacagtt
atggaatgtttgcaccggttctgtagagactgcattgataaatctatgcgactaggaaat
aatgaatgcccagcatgtcgcactcattgtgcaagcagacgttctttgagggatgatcct
aattatgatgcactgattacagccttatatccagatattgacaagtacgaggaagaggag
cttgctttcagtgaacaggagaagactcggaataaaaagattcaagaaaccattgaggaa
acatttcgaagacagtccgaggcaattggtaagaagcgttccacagcaaaagcaaccgcc
actgcctttgcacggaagtacaggagaaatatgcaaacacggggcagaggcagaaccgta
acccctgatattgcccctactggctctgatgatgaggatatacaagaagaaaatgccaat
gaggtcaccaaagagccatcttctgctgatgatcattctccagatttaagacagagaagg
tgtaggaagaggtctgcatcacaagcttcacctgctagaaccattggcagtagtgaccaa
agcgttgaagaaaacgaagtagttggtggaaaagaaattttggccacatccccactgcgg
ggagagatgcttgcatggggaaaaaatggtacacggagccagaatcgacatggcagtgct
agttccaatggcagaatagggaggagtgggcgcattgcaaaattggttgatcacctccgt
actactgatgaaatggataaagagttccacttgtatcttgttctccttcctatcaatgga
caaagcacgcctaatttggaaaagccctatctaagttgtcgaccaaccttgtccattcaa
catcttgtaaagctcattgctcctcaattgtctcggaaagacgaagaacttgagatgtac
ataaggatggaccggcacaatggaagtgttggctcaaaggcttccagtacaggtgaggca
gaaccacgtccatttgatggcttggaaagactgaggggagataaacttctttcggacctt
cacccttcatttgcctcaagcaacggtgatctggagttgctgtatgctttgaaatctgga
gagtag
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