Setaria italica (foxtail millet): 101785030
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Entry
101785030 CDS
T02818
Name
(RefSeq) THO complex subunit 4B
KO
K12881
THO complex subunit 4
Organism
sita
Setaria italica (foxtail millet)
Pathway
sita03013
Nucleocytoplasmic transport
sita03015
mRNA surveillance pathway
sita03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101785030
09122 Translation
03013 Nucleocytoplasmic transport
101785030
03015 mRNA surveillance pathway
101785030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sita03019
]
101785030
03041 Spliceosome [BR:
sita03041
]
101785030
Messenger RNA biogenesis [BR:
sita03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101785030
TREX complex
101785030
Spliceosome [BR:
sita03041
]
Complex C
Other components
EJC/TREX
101785030
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101785030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
101785030
NCBI-ProteinID:
XP_004955855
UniProt:
A0A368PX03
LinkDB
All DBs
Position
II:complement(8325542..8330000)
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AA seq
254 aa
AA seq
DB search
MSSGLDMSLDDLIKQSKSKPKSNHASSSGPARRVPPATRAAPYPPAATKAHRAAAESPYG
VYSEHIAAMAAVAPPPPPATARSLETGTKLHISNLDAGVTVEDVQELFSEVGELKRYSMN
YDKDGISKGTAEVVFARKVDALDAIKKYNGVLLDGKPMNIDLIGSNAERPSMPPLIQNRP
LQNYNDIHSSVPQNQRGGQRKAPQGNGRGGGSIQNSGGRGQGKGRGQDRNRTPLSAADLD
AELDNYHASAVKEK
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcggcctggacatgtccctggacgacctcatcaagcagtccaaatccaagccc
aagtccaaccacgcctcctcgtcggggcccgcccgccgcgtgccgccggccacccgcgcg
gcgccctacccgccggccgccaccaaggcccaccgcgccgccgccgagtcgccctacggg
gtctactccgagcacatcgccgccatggccgcggtcgcgccgccaccgccgccagccacc
gcgaggtcgctcgagacggggacgaagctgcacatctccaaccttgacgccggcgtcacc
gtcgaggatgtccaggaactgttctcggaggttggtgagctcaaacgttattcgatgaac
tatgacaaagatgggatatccaagggaactgcggaagttgtctttgcaaggaaagtggat
gctttggatgctatcaagaaatacaatggtgttctacttgatgggaagccaatgaatata
gatctcattggaagcaatgcggaacgaccttccatgccaccgttgatacagaaccgtcct
ttgcagaactataatgatatccatagcagtgtacctcaaaaccaaagaggtggtcagcga
aaagcacctcaaggcaatggtcgtggtggaggcagtattcagaacagtggcggccgtggg
caggggaaaggccgaggacaggaccggaaccgcacgcccttatctgccgcagatcttgat
gctgaactggacaattaccatgcatcggctgtgaaagagaaatga
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