KEGG   Setaria italica (foxtail millet): 101785030
Entry
101785030         CDS       T02818                                 
Name
(RefSeq) THO complex subunit 4B
  KO
K12881  THO complex subunit 4
Organism
sita  Setaria italica (foxtail millet)
Pathway
sita03013  Nucleocytoplasmic transport
sita03015  mRNA surveillance pathway
sita03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sita00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101785030
  09122 Translation
   03013 Nucleocytoplasmic transport
    101785030
   03015 mRNA surveillance pathway
    101785030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sita03019]
    101785030
   03041 Spliceosome [BR:sita03041]
    101785030
Messenger RNA biogenesis [BR:sita03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     101785030
    TREX complex
     101785030
Spliceosome [BR:sita03041]
 Complex C
  Other components
   EJC/TREX
    101785030
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    101785030
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 101785030
NCBI-ProteinID: XP_004955855
UniProt: A0A368PX03
LinkDB
Position
II:complement(8325542..8330000)
AA seq 254 aa
MSSGLDMSLDDLIKQSKSKPKSNHASSSGPARRVPPATRAAPYPPAATKAHRAAAESPYG
VYSEHIAAMAAVAPPPPPATARSLETGTKLHISNLDAGVTVEDVQELFSEVGELKRYSMN
YDKDGISKGTAEVVFARKVDALDAIKKYNGVLLDGKPMNIDLIGSNAERPSMPPLIQNRP
LQNYNDIHSSVPQNQRGGQRKAPQGNGRGGGSIQNSGGRGQGKGRGQDRNRTPLSAADLD
AELDNYHASAVKEK
NT seq 765 nt   +upstreamnt  +downstreamnt
atgtcgagcggcctggacatgtccctggacgacctcatcaagcagtccaaatccaagccc
aagtccaaccacgcctcctcgtcggggcccgcccgccgcgtgccgccggccacccgcgcg
gcgccctacccgccggccgccaccaaggcccaccgcgccgccgccgagtcgccctacggg
gtctactccgagcacatcgccgccatggccgcggtcgcgccgccaccgccgccagccacc
gcgaggtcgctcgagacggggacgaagctgcacatctccaaccttgacgccggcgtcacc
gtcgaggatgtccaggaactgttctcggaggttggtgagctcaaacgttattcgatgaac
tatgacaaagatgggatatccaagggaactgcggaagttgtctttgcaaggaaagtggat
gctttggatgctatcaagaaatacaatggtgttctacttgatgggaagccaatgaatata
gatctcattggaagcaatgcggaacgaccttccatgccaccgttgatacagaaccgtcct
ttgcagaactataatgatatccatagcagtgtacctcaaaaccaaagaggtggtcagcga
aaagcacctcaaggcaatggtcgtggtggaggcagtattcagaacagtggcggccgtggg
caggggaaaggccgaggacaggaccggaaccgcacgcccttatctgccgcagatcttgat
gctgaactggacaattaccatgcatcggctgtgaaagagaaatga

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