Setaria italica (foxtail millet): 101785473
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Entry
101785473 CDS
T02818
Name
(RefSeq) LOW QUALITY PROTEIN: probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
sita
Setaria italica (foxtail millet)
Brite
KEGG Orthology (KO) [BR:
sita00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
101785473
Enzymes [BR:
sita01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
101785473
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
Motif
Other DBs
NCBI-GeneID:
101785473
NCBI-ProteinID:
XP_022685091
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Position
VIII:234250..238187
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AA seq
710 aa
AA seq
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NKLLATRPSRPTSSSSHASSVQGALTSAPRAYHDCPASACRPAGLGLPLLQISYLSDPFL
QSLTSSSSSSSSSIAICACIQVLVDNGVVQVTLSKPQGHITAVGYNGERNLLHYAGQENS
GGYRDVVWNYPGSDHPRGMIDMLDSTEFKVISSSQEQVELSFRSTYNPSCQDSVRLNIDK
RLVMLKGSSGFYCYAIFEHTSNWPAMNISEARLAFKLNTDKFNYMAISDDIQRYMPSAAD
RDEPRGTALAYKEAVLLVNPEEPQFKGEVDDKYQYSLDNKDNVVHGWISSNHPNPMGFWV
ITPSNEFKSGGPMKRELTSHVGPTSLTMFLGTHYIGDDIVLNIGGGEYWKKVLGPVFIYL
NSSPKHGDLRALWQDAKAQAQTEVSKWPYSFPKSPDFAKAGKRGSVTGRLMVRDRFMRKD
DMPTRMAYIGLAAPGQPGSWATECKGYQFWTTATSCGSFTIGNVRAGVYNLYAWVPGVLG
DYMYTCAVTVTPGCAIDLGDLVFLPPRSGPTLWEIGVPDGTAAEFFIPDVDPRYANRLFL
HREKXALHLXWLTEAYGTRLYPDSDQSLTVGQSDHSKDWFFAHVTRKLGNGNVPATRQIR
FNLDHVVADGTYTLRIALAAAQMSRLQVHVNGGGLFTTPEFGGGNAIARHGIHGVQWSFE
FPIRGYLLQEGENRLSITQSRAFGEFLGVMYDYIRLEGPPGSWRDPTRRP
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
aacaagctgctagctacgagaccttcccgcccaacgtcgtcgtcaagtcatgcatcgtcc
gttcagggcgcactaacaagtgcaccgcgcgcgtaccacgactgcccggcgtctgcgtgc
cggccggccgggcttggcctgcctctactacaaatctcttacctctccgatccttttctt
caatctcttacctcttcttcttcttcctcctcctcctcgatcgccatttgtgcatgcata
caggtgctcgtggacaatggcgtggtgcaggtgacgctgtccaaaccgcagggccacatc
accgccgtcggctacaacggcgagcgcaacctgctgcactacgccggccaggagaactcg
ggagggtaccgggatgtggtgtggaactatcccggctccgatcacccaagagggatgatc
gacatgttggacagtacagagttcaaggtcatatcctcaagccaggagcaagtggagctt
tctttcaggagtacatataacccatcatgtcaagatagtgttcggctcaacattgacaag
agacttgtgatgctgaaaggcagctctgggttctactgctacgccatctttgagcacacc
agcaactggcctgccatgaacatctcagaggctcggctcgctttcaaactaaacacggac
aagttcaactacatggcgatttcagacgacatacaaagatacatgcccagcgcggcagac
agagacgagcctcgaggcactgcactggcctacaaggaggctgttcttctcgttaaccct
gaggagccacagttcaagggagaggtggatgacaagtaccagtactcgctggacaacaag
gacaacgtcgtccatggatggatcagcagcaatcaccccaaccccatgggcttctgggtc
atcacccccagcaacgagttcaagagcggcggccccatgaagagggaactcacctcccac
gtcggacccacctccctcactatgtttctgggaacgcattacattggggatgacattgtc
ctcaacatcggcggtggcgagtattggaagaaggtgttggggccagtcttcatctacctc
aactcgagcccgaaacacggtgatctccgggctctctggcaggatgccaaggcgcaggcg
caaaccgaagtcagcaagtggccgtacagcttccctaaatcaccggacttcgccaaggcc
ggcaagaggggctccgtcaccggaaggctcatggtcagagacaggttcatgaggaaggac
gacatgcctacccggatggcgtacatcggcctcgccgcgcccgggcagcctggctcctgg
gcgacagagtgcaagggttatcagttctggacgacggccacgtcctgcggcagtttcacc
attggcaatgtccgggcaggggtgtacaacctctacgcatgggtccccggggttcttgga
gactacatgtacacttgtgctgtgaccgtaacgccaggttgcgccatcgacctcggtgat
ctcgtgttcttgcctccaagatcaggcccgacgctgtgggagatcggagtcccggacggg
accgccgcggagttcttcattcctgacgtcgaccccagatacgccaaccggctgtttctg
cacagggaaaagtaagctcttcatctttgatggcttacggaagcatatggcacgaggctg
taccctgacagcgatcagagcctcacggtcggtcagagcgaccactccaaggactggttc
tttgcgcatgtcacaaggaagttaggcaatggcaacgtgccagcaacgcgtcagataagg
ttcaacctggaccacgtcgtcgcggacggcacctacacgctgcgcatcgcccttgcagct
gctcagatgtccagactgcaggtgcacgtgaacgggggcgggttgttcacgacgccggag
ttcggcggcggcaacgccatcgcgcggcacggcatccacggcgtgcagtggagcttcgag
ttcccaatcagggggtacctgctgcaggaaggcgagaacaggttgagcatcacgcagagc
agggcctttggcgagttcttgggggtcatgtacgactacatccgcctggaaggacctccc
ggatcctggcgagaccccacgcgacggccatga
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